Hb_004295_020

Information

Type -
Description -
Location Contig4295: 14553-16081
Sequence    

Annotation

kegg
ID rcu:RCOM_1471570
description Thioredoxin II, putative
nr
ID AEC03327.1
description thioredoxin II-type 1 [Hevea brasiliensis]
swissprot
ID O64654
description Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1
trembl
ID I1SSJ8
description Thioredoxin II-type 1 OS=Hevea brasiliensis GN=TrxII1 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like 1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42135: 14552-16190 , PASA_asmbl_42136: 14600-16190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004295_020 0.0 - - thioredoxin II-type 1 [Hevea brasiliensis]
2 Hb_007992_030 0.0923609048 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
3 Hb_000847_070 0.0938184658 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
4 Hb_004223_230 0.0945304807 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
5 Hb_000045_130 0.1033465756 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
6 Hb_052135_030 0.1043948984 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
7 Hb_017170_020 0.1062819155 - - PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
8 Hb_002942_070 0.1109245972 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
9 Hb_003633_130 0.1125228088 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
10 Hb_000345_560 0.1148903624 - - -
11 Hb_001514_020 0.1153708842 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
12 Hb_000260_050 0.1163625388 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
13 Hb_001804_040 0.1172201455 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004502_030 0.1174685449 - - unknown [Populus trichocarpa]
15 Hb_119583_010 0.1183839021 - - 60S ribosomal protein L12A [Hevea brasiliensis]
16 Hb_001623_330 0.1196437395 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
17 Hb_004204_030 0.1213167518 - - unknown [Populus trichocarpa]
18 Hb_001514_200 0.1218669473 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
19 Hb_000866_300 0.1224785277 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
20 Hb_134226_010 0.1226531184 - - 40S ribosomal protein S21e, putative [Ricinus communis]

Gene co-expression network

sample Hb_004295_020 Hb_004295_020 Hb_007992_030 Hb_007992_030 Hb_004295_020--Hb_007992_030 Hb_000847_070 Hb_000847_070 Hb_004295_020--Hb_000847_070 Hb_004223_230 Hb_004223_230 Hb_004295_020--Hb_004223_230 Hb_000045_130 Hb_000045_130 Hb_004295_020--Hb_000045_130 Hb_052135_030 Hb_052135_030 Hb_004295_020--Hb_052135_030 Hb_017170_020 Hb_017170_020 Hb_004295_020--Hb_017170_020 Hb_004502_030 Hb_004502_030 Hb_007992_030--Hb_004502_030 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_004502_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_030620_010 Hb_030620_010 Hb_004223_230--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_004223_230--Hb_000117_040 Hb_102864_010 Hb_102864_010 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_000977_080 Hb_000977_080 Hb_000045_130--Hb_000977_080 Hb_003551_020 Hb_003551_020 Hb_000045_130--Hb_003551_020 Hb_001369_650 Hb_001369_650 Hb_000045_130--Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230 Hb_004899_220 Hb_004899_220 Hb_052135_030--Hb_004899_220 Hb_052135_030--Hb_001369_650 Hb_000260_050 Hb_000260_050 Hb_052135_030--Hb_000260_050 Hb_010810_050 Hb_010810_050 Hb_052135_030--Hb_010810_050 Hb_001623_330 Hb_001623_330 Hb_052135_030--Hb_001623_330 Hb_006816_150 Hb_006816_150 Hb_052135_030--Hb_006816_150 Hb_000621_050 Hb_000621_050 Hb_017170_020--Hb_000621_050 Hb_017170_020--Hb_052135_030 Hb_002498_180 Hb_002498_180 Hb_017170_020--Hb_002498_180 Hb_003029_080 Hb_003029_080 Hb_017170_020--Hb_003029_080 Hb_017170_020--Hb_001623_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.963 42.833 23.3674 21.3058 247.179 206.715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.474 236.899 97.9992 27.2362 2.05329

CAGE analysis