Hb_003029_080

Information

Type -
Description -
Location Contig3029: 49787-56358
Sequence    

Annotation

kegg
ID rcu:RCOM_1346570
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_002515264.1
description peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
swissprot
ID Q9C835
description Peptidyl-prolyl cis-trans isomerase CYP21-4 OS=Arabidopsis thaliana GN=CYP21-4 PE=2 SV=1
trembl
ID B9RNC5
description Peptidyl-prolyl cis-trans isomerase, putative OS=Ricinus communis GN=RCOM_1346570 PE=3 SV=1
Gene Ontology
ID GO:0005794
description peptidyl-prolyl cis-trans isomerase cyp21-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31939: 49815-51537 , PASA_asmbl_31941: 50691-69685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_080 0.0 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
2 Hb_002498_180 0.095495621 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
3 Hb_001623_330 0.0956893189 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
4 Hb_003058_070 0.1004540361 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
5 Hb_000483_160 0.1020845221 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
6 Hb_003001_060 0.1115417449 - - wound-responsive family protein [Populus trichocarpa]
7 Hb_001821_120 0.1153944899 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
8 Hb_000190_060 0.1206298408 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
9 Hb_004297_100 0.1258917059 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
10 Hb_011805_080 0.1286969718 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
11 Hb_002234_210 0.1309311972 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
12 Hb_001369_650 0.1314525647 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
13 Hb_000084_290 0.1317036929 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
14 Hb_000260_050 0.1352005288 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
15 Hb_052135_030 0.1358848437 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
16 Hb_000417_110 0.1360503334 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
17 Hb_001019_090 0.1362198155 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_009787_010 0.1374106616 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
19 Hb_000045_130 0.1375302052 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
20 Hb_002477_240 0.1378999857 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]

Gene co-expression network

sample Hb_003029_080 Hb_003029_080 Hb_002498_180 Hb_002498_180 Hb_003029_080--Hb_002498_180 Hb_001623_330 Hb_001623_330 Hb_003029_080--Hb_001623_330 Hb_003058_070 Hb_003058_070 Hb_003029_080--Hb_003058_070 Hb_000483_160 Hb_000483_160 Hb_003029_080--Hb_000483_160 Hb_003001_060 Hb_003001_060 Hb_003029_080--Hb_003001_060 Hb_001821_120 Hb_001821_120 Hb_003029_080--Hb_001821_120 Hb_000084_290 Hb_000084_290 Hb_002498_180--Hb_000084_290 Hb_005489_130 Hb_005489_130 Hb_002498_180--Hb_005489_130 Hb_002498_180--Hb_001623_330 Hb_000042_300 Hb_000042_300 Hb_002498_180--Hb_000042_300 Hb_000045_130 Hb_000045_130 Hb_002498_180--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_001623_330--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_001623_330--Hb_000045_130 Hb_000417_110 Hb_000417_110 Hb_003058_070--Hb_000417_110 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_003058_070--Hb_000190_060 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_000798_030 Hb_000798_030 Hb_003058_070--Hb_000798_030 Hb_004297_100 Hb_004297_100 Hb_000483_160--Hb_004297_100 Hb_000260_050 Hb_000260_050 Hb_000483_160--Hb_000260_050 Hb_001019_090 Hb_001019_090 Hb_000483_160--Hb_001019_090 Hb_000483_160--Hb_000417_110 Hb_002477_240 Hb_002477_240 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_003001_060--Hb_001369_650 Hb_003001_060--Hb_000417_110 Hb_001821_120--Hb_002234_210 Hb_001821_120--Hb_000190_060 Hb_002293_030 Hb_002293_030 Hb_001821_120--Hb_002293_030 Hb_007441_180 Hb_007441_180 Hb_001821_120--Hb_007441_180 Hb_011310_060 Hb_011310_060 Hb_001821_120--Hb_011310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76722 3.68919 2.01209 1.98023 10.4689 10.5509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8409 21.4414 3.0655 1.30454 0.50533

CAGE analysis