Hb_000042_300

Information

Type -
Description -
Location Contig42: 246663-248387
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41483: 246648-248337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_300 0.0 - - -
2 Hb_019962_030 0.0934710808 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
3 Hb_007007_050 0.105488586 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
4 Hb_000139_350 0.1070872404 - - AtGCP3 interacting protein 1 [Theobroma cacao]
5 Hb_002292_010 0.1082811942 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
6 Hb_004363_010 0.1123036086 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
7 Hb_001898_230 0.115450587 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
8 Hb_000473_040 0.1182716818 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
9 Hb_005535_050 0.1191849163 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
10 Hb_001288_080 0.1203869147 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
11 Hb_000000_160 0.1207049808 - - PREDICTED: membrin-11 [Jatropha curcas]
12 Hb_002983_010 0.1213060867 - - F-box family protein [Populus trichocarpa]
13 Hb_002498_180 0.1213426005 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
14 Hb_001135_020 0.1220313986 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
15 Hb_000084_290 0.1229905631 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
16 Hb_135545_010 0.1245365523 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_001405_050 0.1245878989 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
18 Hb_017469_020 0.125153681 - - -
19 Hb_008112_040 0.1261488551 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
20 Hb_004722_060 0.126900934 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000042_300 Hb_000042_300 Hb_019962_030 Hb_019962_030 Hb_000042_300--Hb_019962_030 Hb_007007_050 Hb_007007_050 Hb_000042_300--Hb_007007_050 Hb_000139_350 Hb_000139_350 Hb_000042_300--Hb_000139_350 Hb_002292_010 Hb_002292_010 Hb_000042_300--Hb_002292_010 Hb_004363_010 Hb_004363_010 Hb_000042_300--Hb_004363_010 Hb_001898_230 Hb_001898_230 Hb_000042_300--Hb_001898_230 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_007007_050--Hb_002292_010 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_135545_010 Hb_135545_010 Hb_000139_350--Hb_135545_010 Hb_000141_040 Hb_000141_040 Hb_000139_350--Hb_000141_040 Hb_007575_060 Hb_007575_060 Hb_000139_350--Hb_007575_060 Hb_012762_050 Hb_012762_050 Hb_000139_350--Hb_012762_050 Hb_001512_070 Hb_001512_070 Hb_000139_350--Hb_001512_070 Hb_002868_010 Hb_002868_010 Hb_000139_350--Hb_002868_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_004363_010--Hb_007007_050 Hb_007164_020 Hb_007164_020 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_000473_040 Hb_000473_040 Hb_001898_230--Hb_000473_040 Hb_001898_230--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5428 10.6448 10.0471 6.2638 17.6533 16.5584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5872 24.0115 9.49466 1.21519 1.82764

CAGE analysis