Hb_007575_060

Information

Type -
Description -
Location Contig7575: 84178-85514
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_111893
description HTR1512; histone H3
nr
ID XP_006288773.1
description hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
swissprot
ID Q71H73
description Histone H3.3 OS=Vitis vinifera PE=2 SV=3
trembl
ID A0A0B2EVW9
description Uncharacterized protein OS=Paenibacillus sp. IHB B 3415 GN=QW71_36435 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57095: 84166-85458 , PASA_asmbl_57096: 84166-85463 , PASA_asmbl_57097: 84477-85458
cDNA
(Sanger)
(ID:Location)		 002_L02.ab1: 84168-85349 , 004_F07.ab1: 84162-85448 , 006_B19.ab1: 84168-85335 , 006_I20.ab1: 84167-85371 , 010_L17.ab1: 84167-85371 , 010_M02.ab1: 84167-85348 , 011_N01.ab1: 84164-85373 , 012_G18.ab1: 84168-85348 , 012_H03.ab1: 84296-85311 , 012_L06.ab1: 84164-85433 , 013_D22.ab1: 84223-85381 , 014_H20.ab1: 84169-85173 , 014_N15.ab1: 84168-85266 , 016_A04.ab1: 84167-85376 , 016_I19.ab1: 84168-85394 , 016_P09.ab1: 84168-85392 , 017_M06.ab1: 84189-85121 , 023_A10.ab1: 84167-85193 , 025_O12.ab1: 84162-85448 , 027_D09.ab1: 84168-85221 , 028_N14.ab1: 84168-85392 , 036_H24.ab1: 84168-85353 , 037_P15.ab1: 84168-85391 , 038_A03.ab1: 84167-85425 , 039_D13.ab1: 84168-85450 , 041_C22.ab1: 84168-85390 , 041_I08.ab1: 84168-84960 , 041_N17.ab1: 84168-85425 , 044_B09.ab1: 84168-85376 , 044_H07.ab1: 84168-85446 , 048_G20.ab1: 84164-85364 , 050_L07.ab1: 84168-85320 , 050_O10.ab1: 84168-85298 , 051_J06.ab1: 84168-85281 , 052_D12.ab1: 84162-85448 , 052_M24.ab1: 84164-85463

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_060 0.0 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
2 Hb_000139_350 0.1002896697 - - AtGCP3 interacting protein 1 [Theobroma cacao]
3 Hb_003929_260 0.1052437582 - - conserved hypothetical protein [Ricinus communis]
4 Hb_135545_010 0.1207246975 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_002150_080 0.1237537749 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
6 Hb_007426_180 0.1247035903 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
7 Hb_017469_020 0.12512137 - - -
8 Hb_002234_100 0.1264341955 - - F-box family protein, putative isoform 1 [Theobroma cacao]
9 Hb_008112_040 0.1293675812 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
10 Hb_000640_080 0.1296319264 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_000395_290 0.1317633282 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
12 Hb_010560_020 0.132248772 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
13 Hb_001934_030 0.1323484945 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
14 Hb_054865_090 0.1329699286 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
15 Hb_000042_030 0.1338007538 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
16 Hb_004032_020 0.1339562442 - - hypothetical protein OsI_04644 [Oryza sativa Indica Group]
17 Hb_001776_090 0.1349121207 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
18 Hb_002232_440 0.1351324858 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
19 Hb_001073_070 0.1354669746 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
20 Hb_003078_040 0.1369978401 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007575_060 Hb_007575_060 Hb_000139_350 Hb_000139_350 Hb_007575_060--Hb_000139_350 Hb_003929_260 Hb_003929_260 Hb_007575_060--Hb_003929_260 Hb_135545_010 Hb_135545_010 Hb_007575_060--Hb_135545_010 Hb_002150_080 Hb_002150_080 Hb_007575_060--Hb_002150_080 Hb_007426_180 Hb_007426_180 Hb_007575_060--Hb_007426_180 Hb_017469_020 Hb_017469_020 Hb_007575_060--Hb_017469_020 Hb_000139_350--Hb_135545_010 Hb_000141_040 Hb_000141_040 Hb_000139_350--Hb_000141_040 Hb_012762_050 Hb_012762_050 Hb_000139_350--Hb_012762_050 Hb_001512_070 Hb_001512_070 Hb_000139_350--Hb_001512_070 Hb_002868_010 Hb_002868_010 Hb_000139_350--Hb_002868_010 Hb_003929_260--Hb_002150_080 Hb_003025_090 Hb_003025_090 Hb_003929_260--Hb_003025_090 Hb_002399_010 Hb_002399_010 Hb_003929_260--Hb_002399_010 Hb_000042_030 Hb_000042_030 Hb_003929_260--Hb_000042_030 Hb_001073_070 Hb_001073_070 Hb_003929_260--Hb_001073_070 Hb_135545_010--Hb_012762_050 Hb_000473_040 Hb_000473_040 Hb_135545_010--Hb_000473_040 Hb_001301_160 Hb_001301_160 Hb_135545_010--Hb_001301_160 Hb_002007_060 Hb_002007_060 Hb_135545_010--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_135545_010--Hb_011571_020 Hb_000139_410 Hb_000139_410 Hb_002150_080--Hb_000139_410 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002685_170 Hb_002685_170 Hb_002150_080--Hb_002685_170 Hb_005551_050 Hb_005551_050 Hb_007426_180--Hb_005551_050 Hb_000679_090 Hb_000679_090 Hb_007426_180--Hb_000679_090 Hb_001552_020 Hb_001552_020 Hb_007426_180--Hb_001552_020 Hb_000500_100 Hb_000500_100 Hb_007426_180--Hb_000500_100 Hb_002256_030 Hb_002256_030 Hb_007426_180--Hb_002256_030 Hb_003376_350 Hb_003376_350 Hb_007426_180--Hb_003376_350 Hb_000395_290 Hb_000395_290 Hb_017469_020--Hb_000395_290 Hb_000000_160 Hb_000000_160 Hb_017469_020--Hb_000000_160 Hb_017469_020--Hb_002868_010 Hb_000649_320 Hb_000649_320 Hb_017469_020--Hb_000649_320 Hb_017469_020--Hb_002007_060 Hb_001898_230 Hb_001898_230 Hb_017469_020--Hb_001898_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2691.76 2105.6 1690.11 342.345 1408.62 1330.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2059.46 3331.01 2001.84 469.979 439.443

CAGE analysis