Hb_000649_320

Information

Type -
Description -
Location Contig649: 323591-325118
Sequence    

Annotation

kegg
ID rcu:RCOM_1143360
description hypothetical protein
nr
ID XP_012072284.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
swissprot
ID F4I4P3
description Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1
trembl
ID B9T6Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1143360 PE=4 SV=1
Gene Ontology
ID GO:0005975
description mediator of rna polymerase ii transcription subunit 23 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52507: 323547-324204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_320 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
2 Hb_000120_330 0.096622269 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017469_020 0.1003023626 - - -
4 Hb_000789_060 0.1072380938 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
5 Hb_006018_040 0.1077921787 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
6 Hb_004586_140 0.1096475876 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
7 Hb_052764_050 0.1122707002 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
8 Hb_002272_020 0.1129830038 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
9 Hb_003020_270 0.1165522685 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
10 Hb_001143_130 0.1174460508 - - peroxidase 2 [Hevea brasiliensis]
11 Hb_003747_220 0.1178013019 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
12 Hb_000179_070 0.118293953 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
13 Hb_006816_350 0.1185129277 - - PREDICTED: syntaxin-43 [Jatropha curcas]
14 Hb_000092_100 0.1196377509 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
15 Hb_000302_270 0.1210628967 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_000059_330 0.121469125 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_002671_140 0.122244492 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_001437_080 0.1222626776 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
19 Hb_003142_030 0.1224524001 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
20 Hb_036790_100 0.1236093195 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_320 Hb_000649_320 Hb_000120_330 Hb_000120_330 Hb_000649_320--Hb_000120_330 Hb_017469_020 Hb_017469_020 Hb_000649_320--Hb_017469_020 Hb_000789_060 Hb_000789_060 Hb_000649_320--Hb_000789_060 Hb_006018_040 Hb_006018_040 Hb_000649_320--Hb_006018_040 Hb_004586_140 Hb_004586_140 Hb_000649_320--Hb_004586_140 Hb_052764_050 Hb_052764_050 Hb_000649_320--Hb_052764_050 Hb_001437_080 Hb_001437_080 Hb_000120_330--Hb_001437_080 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_004032_360 Hb_004032_360 Hb_000120_330--Hb_004032_360 Hb_001143_130 Hb_001143_130 Hb_000120_330--Hb_001143_130 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_000395_290 Hb_000395_290 Hb_017469_020--Hb_000395_290 Hb_000000_160 Hb_000000_160 Hb_017469_020--Hb_000000_160 Hb_002868_010 Hb_002868_010 Hb_017469_020--Hb_002868_010 Hb_002007_060 Hb_002007_060 Hb_017469_020--Hb_002007_060 Hb_001898_230 Hb_001898_230 Hb_017469_020--Hb_001898_230 Hb_000302_270 Hb_000302_270 Hb_000789_060--Hb_000302_270 Hb_005539_220 Hb_005539_220 Hb_000789_060--Hb_005539_220 Hb_008246_040 Hb_008246_040 Hb_000789_060--Hb_008246_040 Hb_000403_050 Hb_000403_050 Hb_000789_060--Hb_000403_050 Hb_002671_140 Hb_002671_140 Hb_000789_060--Hb_002671_140 Hb_000521_320 Hb_000521_320 Hb_000789_060--Hb_000521_320 Hb_000635_180 Hb_000635_180 Hb_006018_040--Hb_000635_180 Hb_005653_060 Hb_005653_060 Hb_006018_040--Hb_005653_060 Hb_003185_080 Hb_003185_080 Hb_006018_040--Hb_003185_080 Hb_006018_040--Hb_000120_330 Hb_006018_040--Hb_001143_130 Hb_000179_070 Hb_000179_070 Hb_004586_140--Hb_000179_070 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_004586_140--Hb_000521_320 Hb_001610_110 Hb_001610_110 Hb_052764_050--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_052764_050--Hb_001288_080 Hb_012114_060 Hb_012114_060 Hb_052764_050--Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_052764_050--Hb_000548_050 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_001623_140 Hb_001623_140 Hb_052764_050--Hb_001623_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52357 2.35182 1.51779 1.52978 1.03823 2.10823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35412 2.68291 1.11592 0.622409 0.697825

CAGE analysis