Hb_006018_040

Information

Type -
Description -
Location Contig6018: 119700-122917
Sequence    

Annotation

kegg
ID rcu:RCOM_0174590
description hypothetical protein
nr
ID XP_012093084.1
description PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
swissprot
ID Q9C1X4
description Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1
trembl
ID A0A067LJJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16297 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase rlim-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50597: 119761-122922 , PASA_asmbl_50598: 119896-120502
cDNA
(Sanger)
(ID:Location)		 001_C13.ab1: 119761-122317 , 004_N14.ab1: 120063-120502

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_040 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
2 Hb_000649_320 0.1077921787 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
3 Hb_000635_180 0.1205048843 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
4 Hb_005653_060 0.1262728333 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
5 Hb_003185_080 0.1264018659 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
6 Hb_000120_330 0.1284926535 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001143_130 0.1301340085 - - peroxidase 2 [Hevea brasiliensis]
8 Hb_001195_600 0.1323751902 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_017224_030 0.135031254 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
10 Hb_020956_020 0.1356215883 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
11 Hb_000002_340 0.13685834 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
12 Hb_077354_010 0.1369378743 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
13 Hb_030736_080 0.1372101153 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001476_080 0.1376841942 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
15 Hb_000210_230 0.137935966 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
16 Hb_000059_330 0.1380775166 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_011883_010 0.1384296762 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
18 Hb_007778_030 0.138549408 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_055488_010 0.1386788844 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
20 Hb_017469_020 0.1392185721 - - -

Gene co-expression network

sample Hb_006018_040 Hb_006018_040 Hb_000649_320 Hb_000649_320 Hb_006018_040--Hb_000649_320 Hb_000635_180 Hb_000635_180 Hb_006018_040--Hb_000635_180 Hb_005653_060 Hb_005653_060 Hb_006018_040--Hb_005653_060 Hb_003185_080 Hb_003185_080 Hb_006018_040--Hb_003185_080 Hb_000120_330 Hb_000120_330 Hb_006018_040--Hb_000120_330 Hb_001143_130 Hb_001143_130 Hb_006018_040--Hb_001143_130 Hb_000649_320--Hb_000120_330 Hb_017469_020 Hb_017469_020 Hb_000649_320--Hb_017469_020 Hb_000789_060 Hb_000789_060 Hb_000649_320--Hb_000789_060 Hb_004586_140 Hb_004586_140 Hb_000649_320--Hb_004586_140 Hb_052764_050 Hb_052764_050 Hb_000649_320--Hb_052764_050 Hb_002284_010 Hb_002284_010 Hb_000635_180--Hb_002284_010 Hb_002301_140 Hb_002301_140 Hb_000635_180--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_000635_180--Hb_028995_040 Hb_005941_040 Hb_005941_040 Hb_000635_180--Hb_005941_040 Hb_030736_080 Hb_030736_080 Hb_000635_180--Hb_030736_080 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_005551_050 Hb_005551_050 Hb_005653_060--Hb_005551_050 Hb_005653_060--Hb_000635_180 Hb_001564_080 Hb_001564_080 Hb_005653_060--Hb_001564_080 Hb_007426_180 Hb_007426_180 Hb_005653_060--Hb_007426_180 Hb_000221_210 Hb_000221_210 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_003185_080--Hb_001235_190 Hb_003185_080--Hb_028995_040 Hb_001437_080 Hb_001437_080 Hb_000120_330--Hb_001437_080 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_004032_360 Hb_004032_360 Hb_000120_330--Hb_004032_360 Hb_000120_330--Hb_001143_130 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_001143_130--Hb_003747_220 Hb_007590_050 Hb_007590_050 Hb_001143_130--Hb_007590_050 Hb_000252_150 Hb_000252_150 Hb_001143_130--Hb_000252_150 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.9631 44.543 20.4862 30.9885 17.8239 40.0238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.1657 69.0399 30.0418 10.74 23.6045

CAGE analysis