Hb_003847_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig3847: 12602-14607
Sequence    

Annotation

kegg
ID rcu:RCOM_1122450
description transcription factor, putative
nr
ID XP_002525467.1
description transcription factor, putative [Ricinus communis]
swissprot
ID D2SMN4
description NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=3 SV=1
trembl
ID B9SHJ8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1122450 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38711: 12863-14473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_020 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_000094_110 0.1322025453 - - conserved hypothetical protein [Ricinus communis]
3 Hb_026687_010 0.1520469271 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
4 Hb_003398_140 0.161043527 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_003992_080 0.181028018 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
6 Hb_001052_030 0.1914140969 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
7 Hb_000340_440 0.1982312975 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
8 Hb_148850_010 0.2019434779 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
9 Hb_004129_150 0.2049711141 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
10 Hb_005396_080 0.2088196245 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
11 Hb_001552_080 0.2125914385 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003095_040 0.2144092363 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
13 Hb_146225_010 0.2152737605 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_033772_050 0.2156548135 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
15 Hb_000175_130 0.2189562832 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
16 Hb_000326_060 0.2198537121 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
17 Hb_009486_190 0.2242825127 - - ATP binding protein, putative [Ricinus communis]
18 Hb_003044_090 0.2243702643 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
19 Hb_002067_140 0.2245639624 - - -
20 Hb_016604_020 0.2254971641 - - -

Gene co-expression network

sample Hb_003847_020 Hb_003847_020 Hb_000094_110 Hb_000094_110 Hb_003847_020--Hb_000094_110 Hb_026687_010 Hb_026687_010 Hb_003847_020--Hb_026687_010 Hb_003398_140 Hb_003398_140 Hb_003847_020--Hb_003398_140 Hb_003992_080 Hb_003992_080 Hb_003847_020--Hb_003992_080 Hb_001052_030 Hb_001052_030 Hb_003847_020--Hb_001052_030 Hb_000340_440 Hb_000340_440 Hb_003847_020--Hb_000340_440 Hb_000094_110--Hb_001052_030 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_026687_010--Hb_003398_140 Hb_028271_020 Hb_028271_020 Hb_026687_010--Hb_028271_020 Hb_000099_070 Hb_000099_070 Hb_026687_010--Hb_000099_070 Hb_026687_010--Hb_003992_080 Hb_026687_010--Hb_000094_110 Hb_086692_020 Hb_086692_020 Hb_003398_140--Hb_086692_020 Hb_003398_140--Hb_000094_110 Hb_002067_140 Hb_002067_140 Hb_003398_140--Hb_002067_140 Hb_003398_140--Hb_028271_020 Hb_016604_020 Hb_016604_020 Hb_003992_080--Hb_016604_020 Hb_002053_060 Hb_002053_060 Hb_003992_080--Hb_002053_060 Hb_033772_050 Hb_033772_050 Hb_003992_080--Hb_033772_050 Hb_002298_050 Hb_002298_050 Hb_003992_080--Hb_002298_050 Hb_003992_080--Hb_000094_110 Hb_009486_190 Hb_009486_190 Hb_003992_080--Hb_009486_190 Hb_001052_030--Hb_146225_010 Hb_002045_230 Hb_002045_230 Hb_001052_030--Hb_002045_230 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_002784_140 Hb_002784_140 Hb_000340_440--Hb_002784_140 Hb_000316_100 Hb_000316_100 Hb_000340_440--Hb_000316_100 Hb_000340_440--Hb_000094_110 Hb_000340_440--Hb_000175_130 Hb_006132_050 Hb_006132_050 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97973 4.34186 0.0973616 0.48164 1.0114 2.94011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60876 26.8733 8.03734 5.42781 0.48126

CAGE analysis