Hb_148850_010

Information

Type -
Description -
Location Contig148850: 3-731
Sequence    

Annotation

kegg
ID rcu:RCOM_0238060
description Potassium transporter, putative
nr
ID XP_012069363.1
description PREDICTED: potassium transporter 5-like [Jatropha curcas]
swissprot
ID Q6H4L9
description Potassium transporter 20 OS=Oryza sativa subsp. japonica GN=HAK20 PE=2 SV=1
trembl
ID A0A067L667
description Potassium transporter OS=Jatropha curcas GN=JCGZ_01993 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12349: 11-487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148850_010 0.0 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
2 Hb_058143_010 0.1643533136 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
3 Hb_000094_110 0.1716866528 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000340_440 0.1717613952 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
5 Hb_004942_020 0.1798020608 - - Potassium transporter, putative [Ricinus communis]
6 Hb_113906_010 0.1801983305 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
7 Hb_003992_080 0.1843447079 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
8 Hb_000352_180 0.1865314408 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001052_030 0.1890280058 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
10 Hb_002067_140 0.1913417218 - - -
11 Hb_002478_020 0.1942800633 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
12 Hb_009974_030 0.1956660622 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
13 Hb_003847_020 0.2019434779 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_005841_040 0.2097700991 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
15 Hb_000316_100 0.2100194581 - - protein with unknown function [Ricinus communis]
16 Hb_002298_050 0.210638698 - - serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_003398_140 0.2119209912 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_012053_050 0.2126146375 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
19 Hb_000175_130 0.2145932351 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
20 Hb_012586_020 0.2171998971 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_148850_010 Hb_148850_010 Hb_058143_010 Hb_058143_010 Hb_148850_010--Hb_058143_010 Hb_000094_110 Hb_000094_110 Hb_148850_010--Hb_000094_110 Hb_000340_440 Hb_000340_440 Hb_148850_010--Hb_000340_440 Hb_004942_020 Hb_004942_020 Hb_148850_010--Hb_004942_020 Hb_113906_010 Hb_113906_010 Hb_148850_010--Hb_113906_010 Hb_003992_080 Hb_003992_080 Hb_148850_010--Hb_003992_080 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_002784_140 Hb_002784_140 Hb_000340_440--Hb_002784_140 Hb_000340_440--Hb_000316_100 Hb_000340_440--Hb_000094_110 Hb_000340_440--Hb_000175_130 Hb_006132_050 Hb_006132_050 Hb_000340_440--Hb_006132_050 Hb_004942_020--Hb_012586_020 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_091433_040 Hb_091433_040 Hb_113906_010--Hb_091433_040 Hb_113906_010--Hb_012586_020 Hb_005914_070 Hb_005914_070 Hb_113906_010--Hb_005914_070 Hb_012053_040 Hb_012053_040 Hb_113906_010--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_113906_010--Hb_003095_070 Hb_016604_020 Hb_016604_020 Hb_003992_080--Hb_016604_020 Hb_002053_060 Hb_002053_060 Hb_003992_080--Hb_002053_060 Hb_033772_050 Hb_033772_050 Hb_003992_080--Hb_033772_050 Hb_002298_050 Hb_002298_050 Hb_003992_080--Hb_002298_050 Hb_003992_080--Hb_000094_110 Hb_009486_190 Hb_009486_190 Hb_003992_080--Hb_009486_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67237 4.89808 0.436254 0.341109 4.31919 1.86259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54919 42.2701 21.5565 2.25477 0

CAGE analysis