Hb_012586_020

Information

Type -
Description -
Location Contig12586: 9144-15253
Sequence    

Annotation

kegg
ID rcu:RCOM_1310660
description wall-associated kinase, putative (EC:2.7.10.2)
nr
ID XP_012075734.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID A0A067KT69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09327 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g18390 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07903: 10023-10339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012586_020 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
2 Hb_004942_020 0.0989715962 - - Potassium transporter, putative [Ricinus communis]
3 Hb_010589_050 0.1128228344 - - -
4 Hb_039946_010 0.1240950486 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
5 Hb_058143_010 0.13529799 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
6 Hb_002290_050 0.1395474123 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000352_180 0.1438637772 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001143_070 0.1491681038 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
9 Hb_113906_010 0.1497060802 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
10 Hb_003095_070 0.1587383085 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
11 Hb_002478_020 0.171009635 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
12 Hb_000316_100 0.1715520368 - - protein with unknown function [Ricinus communis]
13 Hb_000352_160 0.1757275722 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001348_230 0.1829948059 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
15 Hb_089100_050 0.189596698 - - -
16 Hb_000103_550 0.1938235352 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
17 Hb_091433_040 0.1943118127 - - PREDICTED: josephin-like protein [Jatropha curcas]
18 Hb_000450_020 0.195470887 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001922_080 0.1982918013 - - Tellurite resistance protein tehA, putative [Ricinus communis]
20 Hb_005908_040 0.2000052953 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]

Gene co-expression network

sample Hb_012586_020 Hb_012586_020 Hb_004942_020 Hb_004942_020 Hb_012586_020--Hb_004942_020 Hb_010589_050 Hb_010589_050 Hb_012586_020--Hb_010589_050 Hb_039946_010 Hb_039946_010 Hb_012586_020--Hb_039946_010 Hb_058143_010 Hb_058143_010 Hb_012586_020--Hb_058143_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_000352_180 Hb_000352_180 Hb_012586_020--Hb_000352_180 Hb_004942_020--Hb_058143_010 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_002478_020 Hb_002478_020 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_010589_050--Hb_000352_180 Hb_010589_050--Hb_039946_010 Hb_010589_050--Hb_058143_010 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_039946_010--Hb_058143_010 Hb_039946_010--Hb_004942_020 Hb_039946_010--Hb_002478_020 Hb_039946_010--Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_002290_050--Hb_001143_070 Hb_001186_070 Hb_001186_070 Hb_002290_050--Hb_001186_070 Hb_113635_010 Hb_113635_010 Hb_002290_050--Hb_113635_010 Hb_002290_050--Hb_039946_010 Hb_002290_050--Hb_004942_020 Hb_000352_180--Hb_113906_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62194 0.00669075 0.0102814 0.030354 2.42708 1.16601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6455 46.8101 23.0752 1.04908 0

CAGE analysis