Hb_039946_010

Information

Type -
Description -
Location Contig39946: 8725-10011
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09200g
description POPTRDRAFT_578510; hypothetical protein
nr
ID XP_002325015.2
description hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
swissprot
ID Q5XF85
description E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2
trembl
ID B9ILR6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09200g PE=4 SV=2
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039946_010 0.0 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
2 Hb_010589_050 0.1153139293 - - -
3 Hb_012586_020 0.1240950486 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_058143_010 0.1564342085 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
5 Hb_004942_020 0.157850476 - - Potassium transporter, putative [Ricinus communis]
6 Hb_002478_020 0.159093518 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
7 Hb_000352_180 0.1593053624 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002290_050 0.1607320438 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000316_100 0.1647674001 - - protein with unknown function [Ricinus communis]
10 Hb_001143_070 0.1652546762 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000042_100 0.1683859464 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
12 Hb_001373_100 0.1757114535 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003095_070 0.1798840142 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
14 Hb_000352_160 0.1822710785 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004968_070 0.1844082303 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001348_230 0.1897299736 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
17 Hb_001922_080 0.1910100927 - - Tellurite resistance protein tehA, putative [Ricinus communis]
18 Hb_000450_020 0.1951765053 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001842_080 0.1955947169 - - -
20 Hb_113635_010 0.2047484398 - - -

Gene co-expression network

sample Hb_039946_010 Hb_039946_010 Hb_010589_050 Hb_010589_050 Hb_039946_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_039946_010--Hb_012586_020 Hb_058143_010 Hb_058143_010 Hb_039946_010--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_039946_010--Hb_004942_020 Hb_002478_020 Hb_002478_020 Hb_039946_010--Hb_002478_020 Hb_000352_180 Hb_000352_180 Hb_039946_010--Hb_000352_180 Hb_010589_050--Hb_000352_180 Hb_010589_050--Hb_012586_020 Hb_010589_050--Hb_058143_010 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_012586_020--Hb_004942_020 Hb_012586_020--Hb_058143_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_012586_020--Hb_000352_180 Hb_058143_010--Hb_004942_020 Hb_058143_010--Hb_000352_180 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_002478_020--Hb_001143_070 Hb_000920_320 Hb_000920_320 Hb_002478_020--Hb_000920_320 Hb_002478_020--Hb_012586_020 Hb_000352_180--Hb_113906_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.46108 0.122335 0.050836 0.367849 0.520753 1.01295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2608 63.4042 26.3678 2.53793 0.0610048

CAGE analysis