Hb_000352_160

Information

Type -
Description -
Location Contig352: 147115-147750
Sequence    

Annotation

kegg
ID rcu:RCOM_1443930
description hypothetical protein
nr
ID XP_002512797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36567: 146781-147924
cDNA
(Sanger)
(ID:Location)		 015_D14.ab1: 147567-147888 , 015_N15.ab1: 147332-147922 , 038_H14.ab1: 147165-147924 , 042_O02.ab1: 147267-147921

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001369_210 0.0632752122 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
3 Hb_001348_230 0.0814765857 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
4 Hb_002588_040 0.1039559176 - - Pathogenesis-related protein 1 [Theobroma cacao]
5 Hb_001146_060 0.1273899979 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_001767_050 0.142714195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001143_070 0.1445255586 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
8 Hb_010589_050 0.1476720503 - - -
9 Hb_000563_260 0.1489828832 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_012586_020 0.1757275722 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
11 Hb_039946_010 0.1822710785 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
12 Hb_004942_020 0.1835341671 - - Potassium transporter, putative [Ricinus communis]
13 Hb_027337_120 0.1848387838 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
14 Hb_089100_050 0.1874909363 - - -
15 Hb_002290_050 0.1904573071 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001247_330 0.1916229209 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
17 Hb_058143_010 0.1955194889 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
18 Hb_002989_040 0.1964040807 - - hypothetical protein 1 [Hevea brasiliensis]
19 Hb_000033_040 0.1971193584 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007426_050 0.2008695836 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000352_160 Hb_000352_160 Hb_001369_210 Hb_001369_210 Hb_000352_160--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_000352_160--Hb_001348_230 Hb_002588_040 Hb_002588_040 Hb_000352_160--Hb_002588_040 Hb_001146_060 Hb_001146_060 Hb_000352_160--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000352_160--Hb_001767_050 Hb_001143_070 Hb_001143_070 Hb_000352_160--Hb_001143_070 Hb_001369_210--Hb_001348_230 Hb_001369_210--Hb_001146_060 Hb_001369_210--Hb_002588_040 Hb_001369_210--Hb_001767_050 Hb_000563_260 Hb_000563_260 Hb_001369_210--Hb_000563_260 Hb_001348_230--Hb_002588_040 Hb_001348_230--Hb_001146_060 Hb_001348_230--Hb_000563_260 Hb_001348_230--Hb_001143_070 Hb_002588_040--Hb_001146_060 Hb_002588_040--Hb_000563_260 Hb_002588_040--Hb_001767_050 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001767_050--Hb_000962_080 Hb_001247_330 Hb_001247_330 Hb_001767_050--Hb_001247_330 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.633 0 0.0322852 1.24592 2.88232 1.51293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.8703 913.248 391.997 23.1113 1.9917

CAGE analysis