Hb_002588_040

Information

Type -
Description -
Location Contig2588: 48313-48816
Sequence    

Annotation

kegg
ID tcc:TCM_006332
description Pathogenesis-related protein 1
nr
ID XP_007041422.1
description Pathogenesis-related protein 1 [Theobroma cacao]
swissprot
ID P11670
description Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1
trembl
ID A0A061E4T2
description Pathogenesis-related protein 1 OS=Theobroma cacao GN=TCM_006332 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26884: 48193-48865
cDNA
(Sanger)
(ID:Location)		 020_P22.ab1: 48193-48863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002588_040 0.0 - - Pathogenesis-related protein 1 [Theobroma cacao]
2 Hb_001146_060 0.0708439143 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
3 Hb_001348_230 0.0913665767 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
4 Hb_000352_160 0.1039559176 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_210 0.1111990007 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
6 Hb_000563_260 0.1319032906 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
7 Hb_001767_050 0.1707742981 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010589_050 0.1720726128 - - -
9 Hb_089100_050 0.1996687011 - - -
10 Hb_002150_050 0.202338084 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001247_330 0.2033837159 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
12 Hb_000352_180 0.206980387 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001143_070 0.2093926714 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
14 Hb_007426_050 0.2108336755 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
15 Hb_061383_010 0.2114041121 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_027337_120 0.2128047423 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
17 Hb_000450_020 0.2196142332 - - conserved hypothetical protein [Ricinus communis]
18 Hb_029879_090 0.2222849494 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
19 Hb_000033_040 0.2224539549 - - conserved hypothetical protein [Ricinus communis]
20 Hb_039946_010 0.2236941105 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]

Gene co-expression network

sample Hb_002588_040 Hb_002588_040 Hb_001146_060 Hb_001146_060 Hb_002588_040--Hb_001146_060 Hb_001348_230 Hb_001348_230 Hb_002588_040--Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_002588_040--Hb_000352_160 Hb_001369_210 Hb_001369_210 Hb_002588_040--Hb_001369_210 Hb_000563_260 Hb_000563_260 Hb_002588_040--Hb_000563_260 Hb_001767_050 Hb_001767_050 Hb_002588_040--Hb_001767_050 Hb_001146_060--Hb_001369_210 Hb_001146_060--Hb_001348_230 Hb_001146_060--Hb_000352_160 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_001348_230--Hb_000352_160 Hb_001348_230--Hb_001369_210 Hb_001348_230--Hb_000563_260 Hb_001143_070 Hb_001143_070 Hb_001348_230--Hb_001143_070 Hb_000352_160--Hb_001369_210 Hb_000352_160--Hb_001767_050 Hb_000352_160--Hb_001143_070 Hb_001369_210--Hb_001767_050 Hb_001369_210--Hb_000563_260 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090 Hb_000962_080 Hb_000962_080 Hb_001767_050--Hb_000962_080 Hb_001247_330 Hb_001247_330 Hb_001767_050--Hb_001247_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5886 0.351896 0 0.829569 1.78051 0.812823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.5642 1388.97 642.995 113.573 0

CAGE analysis