Hb_001348_230

Information

Type transcription factor
Description TF Family: TRAF
Location Contig1348: 167703-169973
Sequence    

Annotation

kegg
ID rcu:RCOM_1030620
description protein with unknown function
nr
ID XP_002513752.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9XHZ8
description BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1
trembl
ID B9RJ33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030620 PE=4 SV=1
Gene Ontology
ID GO:0031463
description btb poz domain-containing protein at1g21780-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09835: 167693-169912
cDNA
(Sanger)
(ID:Location)		 026_D22.ab1: 168262-169912

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_230 0.0 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
2 Hb_000352_160 0.0814765857 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002588_040 0.0913665767 - - Pathogenesis-related protein 1 [Theobroma cacao]
4 Hb_001369_210 0.0970132958 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
5 Hb_001146_060 0.1263681894 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_000563_260 0.1392862397 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
7 Hb_001143_070 0.1399552663 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
8 Hb_000450_020 0.1466518906 - - conserved hypothetical protein [Ricinus communis]
9 Hb_089100_050 0.1565862445 - - -
10 Hb_007426_050 0.1622105868 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
11 Hb_010589_050 0.1656033443 - - -
12 Hb_000103_030 0.1656796388 - - hypothetical protein VITISV_021700 [Vitis vinifera]
13 Hb_012586_020 0.1829948059 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
14 Hb_001767_050 0.1864424382 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004942_020 0.1873292511 - - Potassium transporter, putative [Ricinus communis]
16 Hb_039946_010 0.1897299736 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
17 Hb_002989_040 0.1934570016 - - hypothetical protein 1 [Hevea brasiliensis]
18 Hb_027337_120 0.1981352536 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
19 Hb_002290_050 0.1995286885 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029879_090 0.2039789526 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_230 Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_001348_230--Hb_000352_160 Hb_002588_040 Hb_002588_040 Hb_001348_230--Hb_002588_040 Hb_001369_210 Hb_001369_210 Hb_001348_230--Hb_001369_210 Hb_001146_060 Hb_001146_060 Hb_001348_230--Hb_001146_060 Hb_000563_260 Hb_000563_260 Hb_001348_230--Hb_000563_260 Hb_001143_070 Hb_001143_070 Hb_001348_230--Hb_001143_070 Hb_000352_160--Hb_001369_210 Hb_000352_160--Hb_002588_040 Hb_000352_160--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000352_160--Hb_001767_050 Hb_000352_160--Hb_001143_070 Hb_002588_040--Hb_001146_060 Hb_002588_040--Hb_001369_210 Hb_002588_040--Hb_000563_260 Hb_002588_040--Hb_001767_050 Hb_001369_210--Hb_001146_060 Hb_001369_210--Hb_001767_050 Hb_001369_210--Hb_000563_260 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9841 0.0574129 0.350781 1.15614 1.82351 0.436956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.174 1118.39 647.037 64.7563 0.0586877

CAGE analysis