Hb_001767_050

Information

Type -
Description -
Location Contig1767: 44952-46466
Sequence    

Annotation

kegg
ID rcu:RCOM_1103690
description hypothetical protein
nr
ID XP_002523034.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAL5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1
Gene Ontology
ID GO:0032502
description plant-specific domain tigr01589 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001369_210 0.127783927 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
3 Hb_000352_160 0.142714195 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000962_080 0.1612806162 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
5 Hb_001146_060 0.1683706687 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_002588_040 0.1707742981 - - Pathogenesis-related protein 1 [Theobroma cacao]
7 Hb_001247_330 0.1730458348 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
8 Hb_001348_230 0.1864424382 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
9 Hb_004968_070 0.1930046296 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001143_070 0.2061686368 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000033_040 0.2063015969 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010589_050 0.2101087649 - - -
13 Hb_058143_010 0.2113550705 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
14 Hb_005520_010 0.2127189465 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
15 Hb_000563_260 0.2133214633 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
16 Hb_001214_080 0.2191769817 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
17 Hb_000703_050 0.2199348991 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002784_150 0.220516681 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
19 Hb_002989_040 0.2253847555 - - hypothetical protein 1 [Hevea brasiliensis]
20 Hb_002150_050 0.2260265445 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001767_050 Hb_001767_050 Hb_001369_210 Hb_001369_210 Hb_001767_050--Hb_001369_210 Hb_000352_160 Hb_000352_160 Hb_001767_050--Hb_000352_160 Hb_000962_080 Hb_000962_080 Hb_001767_050--Hb_000962_080 Hb_001146_060 Hb_001146_060 Hb_001767_050--Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001767_050--Hb_002588_040 Hb_001247_330 Hb_001247_330 Hb_001767_050--Hb_001247_330 Hb_001369_210--Hb_000352_160 Hb_001348_230 Hb_001348_230 Hb_001369_210--Hb_001348_230 Hb_001369_210--Hb_001146_060 Hb_001369_210--Hb_002588_040 Hb_000563_260 Hb_000563_260 Hb_001369_210--Hb_000563_260 Hb_000352_160--Hb_001348_230 Hb_000352_160--Hb_002588_040 Hb_000352_160--Hb_001146_060 Hb_001143_070 Hb_001143_070 Hb_000352_160--Hb_001143_070 Hb_000962_080--Hb_001247_330 Hb_023661_060 Hb_023661_060 Hb_000962_080--Hb_023661_060 Hb_000703_050 Hb_000703_050 Hb_000962_080--Hb_000703_050 Hb_000002_170 Hb_000002_170 Hb_000962_080--Hb_000002_170 Hb_000962_080--Hb_001369_210 Hb_001146_060--Hb_002588_040 Hb_001146_060--Hb_001348_230 Hb_001146_060--Hb_000563_260 Hb_002588_040--Hb_001348_230 Hb_002588_040--Hb_000563_260 Hb_001247_330--Hb_000703_050 Hb_001247_330--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_001247_330--Hb_001214_080 Hb_001247_330--Hb_001369_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161128 0.867952 0.126202 0 0.0378265 0.0716634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89343 37.9283 10.2133 0.779864 0

CAGE analysis