Hb_000703_050

Information

Type -
Description -
Location Contig703: 76544-77796
Sequence    

Annotation

kegg
ID rcu:RCOM_0632350
description hypothetical protein
nr
ID XP_002519674.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S105
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004994_110 0.1193125748 - - -
3 Hb_002725_060 0.122393099 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
4 Hb_001247_330 0.1264037803 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
5 Hb_000962_080 0.1614595218 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
6 Hb_001146_060 0.2044518325 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
7 Hb_001767_050 0.2199348991 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001369_210 0.220856398 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
9 Hb_167711_040 0.226433891 - - PREDICTED: cucumisin-like [Jatropha curcas]
10 Hb_023661_060 0.2299076275 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
11 Hb_000352_160 0.2396041987 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002588_040 0.2463999201 - - Pathogenesis-related protein 1 [Theobroma cacao]
13 Hb_001214_080 0.2491913423 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
14 Hb_002150_050 0.2612494685 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000563_260 0.2703034476 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
16 Hb_000892_070 0.2720118403 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
17 Hb_001348_230 0.2851143337 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_000033_040 0.2972562139 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002784_150 0.3019303801 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
20 Hb_000002_170 0.3104887595 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]

Gene co-expression network

sample Hb_000703_050 Hb_000703_050 Hb_004994_110 Hb_004994_110 Hb_000703_050--Hb_004994_110 Hb_002725_060 Hb_002725_060 Hb_000703_050--Hb_002725_060 Hb_001247_330 Hb_001247_330 Hb_000703_050--Hb_001247_330 Hb_000962_080 Hb_000962_080 Hb_000703_050--Hb_000962_080 Hb_001146_060 Hb_001146_060 Hb_000703_050--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000703_050--Hb_001767_050 Hb_004994_110--Hb_002725_060 Hb_167711_040 Hb_167711_040 Hb_004994_110--Hb_167711_040 Hb_004994_110--Hb_001247_330 Hb_004994_110--Hb_001146_060 Hb_000756_020 Hb_000756_020 Hb_004994_110--Hb_000756_020 Hb_002725_060--Hb_167711_040 Hb_002725_060--Hb_001146_060 Hb_002725_060--Hb_001247_330 Hb_002725_060--Hb_000756_020 Hb_001247_330--Hb_000962_080 Hb_001247_330--Hb_001767_050 Hb_001247_330--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_001247_330--Hb_001214_080 Hb_001369_210 Hb_001369_210 Hb_001247_330--Hb_001369_210 Hb_023661_060 Hb_023661_060 Hb_000962_080--Hb_023661_060 Hb_000962_080--Hb_001767_050 Hb_000002_170 Hb_000002_170 Hb_000962_080--Hb_000002_170 Hb_000962_080--Hb_001369_210 Hb_002588_040 Hb_002588_040 Hb_001146_060--Hb_002588_040 Hb_001146_060--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_001146_060--Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_001146_060--Hb_000352_160 Hb_000563_260 Hb_000563_260 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_001767_050--Hb_001369_210 Hb_001767_050--Hb_000352_160 Hb_001767_050--Hb_002588_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.443218 0.130093 0 0

CAGE analysis