Hb_002725_060

Information

Type -
Description -
Location Contig2725: 133548-139815
Sequence    

Annotation

kegg
ID rcu:RCOM_0650310
description hypothetical protein
nr
ID XP_012085858.1
description PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SBA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0650310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002725_060 0.0 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
2 Hb_004994_110 0.0031014403 - - -
3 Hb_167711_040 0.1052480925 - - PREDICTED: cucumisin-like [Jatropha curcas]
4 Hb_000703_050 0.122393099 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001146_060 0.1876369668 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_001247_330 0.1876965466 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
7 Hb_000756_020 0.200254182 - - BnaA05g19440D [Brassica napus]
8 Hb_001369_210 0.2212725409 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
9 Hb_000892_070 0.2310251374 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
10 Hb_000249_120 0.2327617481 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
11 Hb_002588_040 0.2346498018 - - Pathogenesis-related protein 1 [Theobroma cacao]
12 Hb_000352_160 0.2349187426 - - conserved hypothetical protein [Ricinus communis]
13 Hb_163268_010 0.2371595806 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
14 Hb_001741_130 0.2373216326 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
15 Hb_000563_260 0.2478784719 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
16 Hb_001348_230 0.2558694593 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
17 Hb_000962_080 0.2559011087 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
18 Hb_008505_020 0.2559839084 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_033835_020 0.2570114473 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_001767_050 0.2570335292 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002725_060 Hb_002725_060 Hb_004994_110 Hb_004994_110 Hb_002725_060--Hb_004994_110 Hb_167711_040 Hb_167711_040 Hb_002725_060--Hb_167711_040 Hb_000703_050 Hb_000703_050 Hb_002725_060--Hb_000703_050 Hb_001146_060 Hb_001146_060 Hb_002725_060--Hb_001146_060 Hb_001247_330 Hb_001247_330 Hb_002725_060--Hb_001247_330 Hb_000756_020 Hb_000756_020 Hb_002725_060--Hb_000756_020 Hb_004994_110--Hb_167711_040 Hb_004994_110--Hb_000703_050 Hb_004994_110--Hb_001247_330 Hb_004994_110--Hb_001146_060 Hb_004994_110--Hb_000756_020 Hb_167711_040--Hb_000756_020 Hb_163268_010 Hb_163268_010 Hb_167711_040--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_167711_040--Hb_001741_130 Hb_008505_020 Hb_008505_020 Hb_167711_040--Hb_008505_020 Hb_000703_050--Hb_001247_330 Hb_000962_080 Hb_000962_080 Hb_000703_050--Hb_000962_080 Hb_000703_050--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000703_050--Hb_001767_050 Hb_002588_040 Hb_002588_040 Hb_001146_060--Hb_002588_040 Hb_001369_210 Hb_001369_210 Hb_001146_060--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_001146_060--Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_001146_060--Hb_000352_160 Hb_000563_260 Hb_000563_260 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_001247_330--Hb_000962_080 Hb_001247_330--Hb_001767_050 Hb_001247_330--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_001247_330--Hb_001214_080 Hb_001247_330--Hb_001369_210 Hb_000756_020--Hb_163268_010 Hb_000756_020--Hb_001741_130 Hb_000756_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_000756_020--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_000756_020--Hb_005531_010 Hb_002240_040 Hb_002240_040 Hb_000756_020--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.353375 0.196688 0 0

CAGE analysis