Hb_001247_330

Information

Type -
Description -
Location Contig1247: 262413-262667
Sequence    

Annotation

kegg
ID rcu:RCOM_1436800
description hypothetical protein
nr
ID KDP23331.1
description hypothetical protein JCGZ_23164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_330 0.0 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
2 Hb_000703_050 0.1264037803 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000962_080 0.1288992591 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
4 Hb_001767_050 0.1730458348 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001146_060 0.1734362014 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_001214_080 0.1748311202 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
7 Hb_001369_210 0.1846465567 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
8 Hb_004994_110 0.1854347747 - - -
9 Hb_002150_050 0.1862329132 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002725_060 0.1876965466 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
11 Hb_000352_160 0.1916229209 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002588_040 0.2033837159 - - Pathogenesis-related protein 1 [Theobroma cacao]
13 Hb_023661_060 0.2250628639 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
14 Hb_000563_260 0.2407293359 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
15 Hb_000033_040 0.2463780344 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001348_230 0.2475875798 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
17 Hb_002784_150 0.2485792167 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
18 Hb_027337_120 0.2551206702 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
19 Hb_061383_010 0.2640761614 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_000002_170 0.2666728387 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]

Gene co-expression network

sample Hb_001247_330 Hb_001247_330 Hb_000703_050 Hb_000703_050 Hb_001247_330--Hb_000703_050 Hb_000962_080 Hb_000962_080 Hb_001247_330--Hb_000962_080 Hb_001767_050 Hb_001767_050 Hb_001247_330--Hb_001767_050 Hb_001146_060 Hb_001146_060 Hb_001247_330--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_001247_330--Hb_001214_080 Hb_001369_210 Hb_001369_210 Hb_001247_330--Hb_001369_210 Hb_004994_110 Hb_004994_110 Hb_000703_050--Hb_004994_110 Hb_002725_060 Hb_002725_060 Hb_000703_050--Hb_002725_060 Hb_000703_050--Hb_000962_080 Hb_000703_050--Hb_001146_060 Hb_000703_050--Hb_001767_050 Hb_023661_060 Hb_023661_060 Hb_000962_080--Hb_023661_060 Hb_000962_080--Hb_001767_050 Hb_000002_170 Hb_000002_170 Hb_000962_080--Hb_000002_170 Hb_000962_080--Hb_001369_210 Hb_001767_050--Hb_001369_210 Hb_000352_160 Hb_000352_160 Hb_001767_050--Hb_000352_160 Hb_001767_050--Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001767_050--Hb_002588_040 Hb_001146_060--Hb_002588_040 Hb_001146_060--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_001146_060--Hb_001348_230 Hb_001146_060--Hb_000352_160 Hb_000563_260 Hb_000563_260 Hb_001146_060--Hb_000563_260 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001214_080--Hb_001767_050 Hb_001214_080--Hb_000962_080 Hb_001369_210--Hb_000352_160 Hb_001369_210--Hb_001348_230 Hb_001369_210--Hb_002588_040 Hb_001369_210--Hb_000563_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259138 0 0.27021 0 0.248727 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588564 66.2381 17.4456 0.655998 0.64536

CAGE analysis