Hb_002784_150

Information

Type -
Description -
Location Contig2784: 142170-142373
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06620g
description hypothetical protein
nr
ID XP_006368625.1
description hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GSR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06620g PE=4 SV=1
Gene Ontology
ID GO:0016021
description hypothetical protein POPTR_0001s06620g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29100: 141941-142434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_150 0.0 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
2 Hb_004968_070 0.1575359135 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000033_040 0.179685295 - - conserved hypothetical protein [Ricinus communis]
4 Hb_058143_010 0.1968466867 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
5 Hb_005520_010 0.1990871566 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
6 Hb_086692_020 0.2062497808 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
7 Hb_001214_080 0.2091944745 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
8 Hb_004100_090 0.2112082009 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
9 Hb_010589_050 0.2181869218 - - -
10 Hb_005321_010 0.2193692863 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
11 Hb_001767_050 0.220516681 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002150_050 0.2215666307 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012573_010 0.2224941132 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
14 Hb_000340_440 0.2244310066 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
15 Hb_002784_140 0.226254532 - - glutamate receptor 2 plant, putative [Ricinus communis]
16 Hb_001277_080 0.2281339505 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
17 Hb_027892_040 0.2284464811 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
18 Hb_001085_180 0.234001124 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000352_160 0.2344768589 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001266_030 0.2395861833 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002784_150 Hb_002784_150 Hb_004968_070 Hb_004968_070 Hb_002784_150--Hb_004968_070 Hb_000033_040 Hb_000033_040 Hb_002784_150--Hb_000033_040 Hb_058143_010 Hb_058143_010 Hb_002784_150--Hb_058143_010 Hb_005520_010 Hb_005520_010 Hb_002784_150--Hb_005520_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_001214_080 Hb_001214_080 Hb_002784_150--Hb_001214_080 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_004968_070--Hb_058143_010 Hb_032202_250 Hb_032202_250 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080 Hb_001277_080 Hb_001277_080 Hb_004968_070--Hb_001277_080 Hb_027337_120 Hb_027337_120 Hb_000033_040--Hb_027337_120 Hb_027892_040 Hb_027892_040 Hb_000033_040--Hb_027892_040 Hb_000589_160 Hb_000589_160 Hb_000033_040--Hb_000589_160 Hb_000033_040--Hb_058143_010 Hb_000078_020 Hb_000078_020 Hb_000033_040--Hb_000078_020 Hb_004942_020 Hb_004942_020 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_005520_010--Hb_004968_070 Hb_005520_010--Hb_000033_040 Hb_005520_010--Hb_058143_010 Hb_005520_010--Hb_027892_040 Hb_141194_010 Hb_141194_010 Hb_005520_010--Hb_141194_010 Hb_003398_140 Hb_003398_140 Hb_086692_020--Hb_003398_140 Hb_012305_020 Hb_012305_020 Hb_086692_020--Hb_012305_020 Hb_061383_010 Hb_061383_010 Hb_086692_020--Hb_061383_010 Hb_001266_030 Hb_001266_030 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_001396_090 Hb_001396_090 Hb_086692_020--Hb_001396_090 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_001214_080--Hb_000033_040 Hb_001767_050 Hb_001767_050 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5998 4.65922 0 21.7156 6.79897 1.85543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7586 416.431 71.151 7.03513 1.22487

CAGE analysis