Hb_000033_040

Information

Type -
Description -
Location Contig33: 58803-59207
Sequence    

Annotation

kegg
ID rcu:RCOM_0385690
description hypothetical protein
nr
ID XP_002533339.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NMD6
description Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1
trembl
ID B9T520
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0385690 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein auxin-regulated gene involved in organ size-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34682: 58747-60158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027337_120 0.1771741013 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
3 Hb_002784_150 0.179685295 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
4 Hb_027892_040 0.1808018624 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
5 Hb_000589_160 0.1832608803 - - PREDICTED: expansin-A4 [Jatropha curcas]
6 Hb_058143_010 0.1878406483 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
7 Hb_000078_020 0.1893484739 - - -
8 Hb_004100_090 0.1930266687 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
9 Hb_005520_010 0.194017747 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_010589_050 0.1952934874 - - -
11 Hb_000352_160 0.1971193584 - - conserved hypothetical protein [Ricinus communis]
12 Hb_086692_020 0.2011169578 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
13 Hb_004968_070 0.2045542628 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000352_180 0.2047517131 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000340_440 0.2057093709 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
16 Hb_001767_050 0.2063015969 - - conserved hypothetical protein [Ricinus communis]
17 Hb_039946_010 0.2068852852 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
18 Hb_002150_050 0.209257364 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000563_260 0.2095868035 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
20 Hb_001214_080 0.2118904638 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]

Gene co-expression network

sample Hb_000033_040 Hb_000033_040 Hb_027337_120 Hb_027337_120 Hb_000033_040--Hb_027337_120 Hb_002784_150 Hb_002784_150 Hb_000033_040--Hb_002784_150 Hb_027892_040 Hb_027892_040 Hb_000033_040--Hb_027892_040 Hb_000589_160 Hb_000589_160 Hb_000033_040--Hb_000589_160 Hb_058143_010 Hb_058143_010 Hb_000033_040--Hb_058143_010 Hb_000078_020 Hb_000078_020 Hb_000033_040--Hb_000078_020 Hb_000042_100 Hb_000042_100 Hb_027337_120--Hb_000042_100 Hb_002150_050 Hb_002150_050 Hb_027337_120--Hb_002150_050 Hb_027337_120--Hb_000589_160 Hb_007426_050 Hb_007426_050 Hb_027337_120--Hb_007426_050 Hb_000352_160 Hb_000352_160 Hb_027337_120--Hb_000352_160 Hb_004968_070 Hb_004968_070 Hb_002784_150--Hb_004968_070 Hb_002784_150--Hb_058143_010 Hb_005520_010 Hb_005520_010 Hb_002784_150--Hb_005520_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_001214_080 Hb_001214_080 Hb_002784_150--Hb_001214_080 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160 Hb_000316_100 Hb_000316_100 Hb_027892_040--Hb_000316_100 Hb_012053_050 Hb_012053_050 Hb_000589_160--Hb_012053_050 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_001369_600 Hb_001369_600 Hb_000589_160--Hb_001369_600 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_004942_020 Hb_004942_020 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_058143_010--Hb_000316_100 Hb_000078_020--Hb_000316_100 Hb_000078_020--Hb_027892_040 Hb_000340_440 Hb_000340_440 Hb_000078_020--Hb_000340_440 Hb_002045_230 Hb_002045_230 Hb_000078_020--Hb_002045_230 Hb_004159_050 Hb_004159_050 Hb_000078_020--Hb_004159_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10269 0.534283 3.00911 2.58838 0.642532 2.42137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.44888 77.0382 25.7855 1.56817 0

CAGE analysis