Hb_000042_100

Information

Type -
Description -
Location Contig42: 101995-104395
Sequence    

Annotation

kegg
ID egr:104448410
description uncharacterized LOC104448410
nr
ID XP_010060519.1
description PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059BMG8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41464: 102115-102564 , PASA_asmbl_41465: 104162-104629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_100 0.0 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
2 Hb_027337_120 0.1577859696 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
3 Hb_039946_010 0.1683859464 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
4 Hb_010589_050 0.2050647754 - - -
5 Hb_012586_020 0.206956533 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
6 Hb_000352_180 0.2098359745 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000352_160 0.211801376 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001776_170 0.2137231294 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000589_160 0.214035139 - - PREDICTED: expansin-A4 [Jatropha curcas]
10 Hb_012053_040 0.215681612 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
11 Hb_000809_030 0.2159991636 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
12 Hb_000111_010 0.2162890793 - - DNA-directed RNA polymerase, putative [Ricinus communis]
13 Hb_002290_050 0.2169784851 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004942_020 0.2173907374 - - Potassium transporter, putative [Ricinus communis]
15 Hb_002105_030 0.2178272931 - - -
16 Hb_000033_040 0.2193162846 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001348_230 0.2198411503 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_113906_010 0.2198637884 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
19 Hb_001369_600 0.2203402314 - - kinase, putative [Ricinus communis]
20 Hb_002067_140 0.222075115 - - -

Gene co-expression network

sample Hb_000042_100 Hb_000042_100 Hb_027337_120 Hb_027337_120 Hb_000042_100--Hb_027337_120 Hb_039946_010 Hb_039946_010 Hb_000042_100--Hb_039946_010 Hb_010589_050 Hb_010589_050 Hb_000042_100--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_000042_100--Hb_012586_020 Hb_000352_180 Hb_000352_180 Hb_000042_100--Hb_000352_180 Hb_000352_160 Hb_000352_160 Hb_000042_100--Hb_000352_160 Hb_002150_050 Hb_002150_050 Hb_027337_120--Hb_002150_050 Hb_000589_160 Hb_000589_160 Hb_027337_120--Hb_000589_160 Hb_000033_040 Hb_000033_040 Hb_027337_120--Hb_000033_040 Hb_007426_050 Hb_007426_050 Hb_027337_120--Hb_007426_050 Hb_027337_120--Hb_000352_160 Hb_039946_010--Hb_010589_050 Hb_039946_010--Hb_012586_020 Hb_058143_010 Hb_058143_010 Hb_039946_010--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_039946_010--Hb_004942_020 Hb_002478_020 Hb_002478_020 Hb_039946_010--Hb_002478_020 Hb_039946_010--Hb_000352_180 Hb_010589_050--Hb_000352_180 Hb_010589_050--Hb_012586_020 Hb_010589_050--Hb_058143_010 Hb_010589_050--Hb_004942_020 Hb_010589_050--Hb_000352_160 Hb_012586_020--Hb_004942_020 Hb_012586_020--Hb_058143_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_012586_020--Hb_000352_180 Hb_000352_180--Hb_058143_010 Hb_000352_180--Hb_004942_020 Hb_113906_010 Hb_113906_010 Hb_000352_180--Hb_113906_010 Hb_001369_210 Hb_001369_210 Hb_000352_160--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_000352_160--Hb_001348_230 Hb_002588_040 Hb_002588_040 Hb_000352_160--Hb_002588_040 Hb_001146_060 Hb_001146_060 Hb_000352_160--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000352_160--Hb_001767_050 Hb_001143_070 Hb_001143_070 Hb_000352_160--Hb_001143_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10047 0 0.0519459 0.70911 0.191292 0.254457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69304 19.7026 11.9323 0.59683 1.17105

CAGE analysis