Hb_000589_160

Information

Type -
Description -
Location Contig589: 121029-123047
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21000g
description POPTRDRAFT_770354; alpha-expansin 9 precursor family protein
nr
ID XP_012089051.1
description PREDICTED: expansin-A4 [Jatropha curcas]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID A0A067LJT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01440 PE=3 SV=1
Gene Ontology
ID GO:0005576
description alpha-expansin 9 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50081: 121092-123037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_160 0.0 - - PREDICTED: expansin-A4 [Jatropha curcas]
2 Hb_012053_050 0.1310484853 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
3 Hb_012053_010 0.154273664 - - srpk, putative [Ricinus communis]
4 Hb_004100_090 0.164278015 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
5 Hb_001369_600 0.1671532574 - - kinase, putative [Ricinus communis]
6 Hb_002105_030 0.1711501848 - - -
7 Hb_027337_120 0.174410556 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
8 Hb_000033_040 0.1832608803 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002344_070 0.1845715966 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
10 Hb_000809_030 0.1863774007 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
11 Hb_001776_170 0.1874638114 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000123_160 0.1890306493 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_138455_010 0.189076364 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003540_200 0.1892284549 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
15 Hb_025645_030 0.1895194902 - - -
16 Hb_027892_040 0.1924999346 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
17 Hb_000045_210 0.194346502 - - -
18 Hb_001488_370 0.2014664882 - - Esterase PIR7B, putative [Ricinus communis]
19 Hb_006420_030 0.2021240497 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_001225_010 0.2034040935 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000589_160 Hb_000589_160 Hb_012053_050 Hb_012053_050 Hb_000589_160--Hb_012053_050 Hb_012053_010 Hb_012053_010 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_001369_600 Hb_001369_600 Hb_000589_160--Hb_001369_600 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120 Hb_012053_050--Hb_001369_600 Hb_001776_170 Hb_001776_170 Hb_012053_050--Hb_001776_170 Hb_000373_180 Hb_000373_180 Hb_012053_050--Hb_000373_180 Hb_002759_240 Hb_002759_240 Hb_012053_050--Hb_002759_240 Hb_001488_370 Hb_001488_370 Hb_012053_050--Hb_001488_370 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_005321_010 Hb_005321_010 Hb_004100_090--Hb_005321_010 Hb_000483_090 Hb_000483_090 Hb_004100_090--Hb_000483_090 Hb_004100_090--Hb_012053_010 Hb_004100_090--Hb_003540_200 Hb_027892_040 Hb_027892_040 Hb_004100_090--Hb_027892_040 Hb_002067_140 Hb_002067_140 Hb_001369_600--Hb_002067_140 Hb_001369_600--Hb_001776_170 Hb_001369_600--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_001369_600--Hb_007426_050 Hb_001386_050 Hb_001386_050 Hb_002105_030--Hb_001386_050 Hb_001449_090 Hb_001449_090 Hb_002105_030--Hb_001449_090 Hb_002105_030--Hb_002344_070 Hb_146225_010 Hb_146225_010 Hb_002105_030--Hb_146225_010 Hb_000282_070 Hb_000282_070 Hb_002105_030--Hb_000282_070 Hb_000042_100 Hb_000042_100 Hb_027337_120--Hb_000042_100 Hb_002150_050 Hb_002150_050 Hb_027337_120--Hb_002150_050 Hb_000033_040 Hb_000033_040 Hb_027337_120--Hb_000033_040 Hb_027337_120--Hb_007426_050 Hb_000352_160 Hb_000352_160 Hb_027337_120--Hb_000352_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5338 3.91777 30.8797 70.0806 27.6625 21.7722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.6125 544.412 281.088 29.5247 22.0881

CAGE analysis