Hb_000282_070

Information

Type -
Description -
Location Contig282: 128701-131905
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05130g
description POPTRDRAFT_809030; hypothetical protein
nr
ID XP_012077293.1
description PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
swissprot
ID F4ITL6
description Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1
trembl
ID A9PHX8
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29518: 128679-131921 , PASA_asmbl_29519: 128679-131921 , PASA_asmbl_29521: 129614-131972 , PASA_asmbl_29522: 128679-129250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_070 0.0 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
2 Hb_003326_020 0.1074979988 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
3 Hb_146225_010 0.1131679393 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
4 Hb_006006_050 0.1161362608 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
5 Hb_001269_170 0.1204944684 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
6 Hb_007044_060 0.1210306377 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002217_450 0.1225465961 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
8 Hb_001225_010 0.1289788581 - - unnamed protein product [Coffea canephora]
9 Hb_002344_070 0.1307618789 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
10 Hb_002105_030 0.1314712892 - - -
11 Hb_001143_080 0.1322583916 - - PREDICTED: F-box protein 7 [Jatropha curcas]
12 Hb_005841_050 0.1330593112 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
13 Hb_000373_180 0.1346782431 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
14 Hb_000331_700 0.1351238551 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_000203_020 0.1354182515 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_001141_030 0.1364210613 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
17 Hb_002909_130 0.1365866977 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_002298_050 0.1367669902 - - serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_000330_070 0.1379813198 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
20 Hb_000239_030 0.1386631578 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000282_070 Hb_000282_070 Hb_003326_020 Hb_003326_020 Hb_000282_070--Hb_003326_020 Hb_146225_010 Hb_146225_010 Hb_000282_070--Hb_146225_010 Hb_006006_050 Hb_006006_050 Hb_000282_070--Hb_006006_050 Hb_001269_170 Hb_001269_170 Hb_000282_070--Hb_001269_170 Hb_007044_060 Hb_007044_060 Hb_000282_070--Hb_007044_060 Hb_002217_450 Hb_002217_450 Hb_000282_070--Hb_002217_450 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_000239_030 Hb_000239_030 Hb_003326_020--Hb_000239_030 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_005841_050 Hb_005841_050 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_146225_010--Hb_000239_030 Hb_001369_170 Hb_001369_170 Hb_006006_050--Hb_001369_170 Hb_000788_010 Hb_000788_010 Hb_006006_050--Hb_000788_010 Hb_000997_190 Hb_000997_190 Hb_006006_050--Hb_000997_190 Hb_001225_010 Hb_001225_010 Hb_006006_050--Hb_001225_010 Hb_008772_010 Hb_008772_010 Hb_006006_050--Hb_008772_010 Hb_001143_080 Hb_001143_080 Hb_001269_170--Hb_001143_080 Hb_004375_100 Hb_004375_100 Hb_001269_170--Hb_004375_100 Hb_012753_160 Hb_012753_160 Hb_001269_170--Hb_012753_160 Hb_000136_170 Hb_000136_170 Hb_001269_170--Hb_000136_170 Hb_005463_040 Hb_005463_040 Hb_001269_170--Hb_005463_040 Hb_001269_170--Hb_007044_060 Hb_034406_020 Hb_034406_020 Hb_007044_060--Hb_034406_020 Hb_002397_070 Hb_002397_070 Hb_007044_060--Hb_002397_070 Hb_002231_030 Hb_002231_030 Hb_007044_060--Hb_002231_030 Hb_000072_080 Hb_000072_080 Hb_007044_060--Hb_000072_080 Hb_001287_030 Hb_001287_030 Hb_007044_060--Hb_001287_030 Hb_001141_030 Hb_001141_030 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_021409_090 Hb_021409_090 Hb_002217_450--Hb_021409_090 Hb_002217_450--Hb_005841_050 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7393 4.44641 4.02378 12.614 9.13904 11.4925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5615 75.4989 34.4844 14.1177 7.81998

CAGE analysis