Hb_007426_050

Information

Type transcription factor
Description TF Family: Tify
Location Contig7426: 65462-68423
Sequence    

Annotation

kegg
ID rcu:RCOM_0631620
description hypothetical protein
nr
ID AIY25009.1
description JAZ8 [Hevea brasiliensis]
swissprot
ID Q8LBM2
description Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1
trembl
ID A0A0B4RUY2
description JAZ8 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56534: 66760-68412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_050 0.0 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
2 Hb_012053_040 0.1409650776 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
3 Hb_000563_260 0.1611190439 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
4 Hb_001348_230 0.1622105868 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
5 Hb_001369_600 0.163598033 - - kinase, putative [Ricinus communis]
6 Hb_029879_090 0.1755603082 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
7 Hb_141194_010 0.1768728331 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
8 Hb_001143_070 0.1769234153 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
9 Hb_027337_120 0.184079569 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
10 Hb_001776_170 0.1857005779 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000450_020 0.1857848929 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002067_140 0.1870278716 - - -
13 Hb_000103_030 0.1999664439 - - hypothetical protein VITISV_021700 [Vitis vinifera]
14 Hb_003020_170 0.2000573546 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_000352_160 0.2008695836 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004064_020 0.206193484 - - hypothetical protein M569_06853, partial [Genlisea aurea]
17 Hb_002588_040 0.2108336755 - - Pathogenesis-related protein 1 [Theobroma cacao]
18 Hb_089100_050 0.2108799662 - - -
19 Hb_001369_210 0.2111117883 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
20 Hb_004942_020 0.2186716602 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_007426_050 Hb_007426_050 Hb_012053_040 Hb_012053_040 Hb_007426_050--Hb_012053_040 Hb_000563_260 Hb_000563_260 Hb_007426_050--Hb_000563_260 Hb_001348_230 Hb_001348_230 Hb_007426_050--Hb_001348_230 Hb_001369_600 Hb_001369_600 Hb_007426_050--Hb_001369_600 Hb_029879_090 Hb_029879_090 Hb_007426_050--Hb_029879_090 Hb_141194_010 Hb_141194_010 Hb_007426_050--Hb_141194_010 Hb_001511_140 Hb_001511_140 Hb_012053_040--Hb_001511_140 Hb_000788_080 Hb_000788_080 Hb_012053_040--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_012053_040--Hb_001776_170 Hb_001143_070 Hb_001143_070 Hb_012053_040--Hb_001143_070 Hb_000111_010 Hb_000111_010 Hb_012053_040--Hb_000111_010 Hb_002588_040 Hb_002588_040 Hb_000563_260--Hb_002588_040 Hb_000563_260--Hb_001348_230 Hb_001146_060 Hb_001146_060 Hb_000563_260--Hb_001146_060 Hb_000352_160 Hb_000352_160 Hb_000563_260--Hb_000352_160 Hb_000563_260--Hb_029879_090 Hb_001369_210 Hb_001369_210 Hb_000563_260--Hb_001369_210 Hb_001348_230--Hb_000352_160 Hb_001348_230--Hb_002588_040 Hb_001348_230--Hb_001369_210 Hb_001348_230--Hb_001146_060 Hb_001348_230--Hb_001143_070 Hb_002067_140 Hb_002067_140 Hb_001369_600--Hb_002067_140 Hb_012053_050 Hb_012053_050 Hb_001369_600--Hb_012053_050 Hb_001369_600--Hb_001776_170 Hb_001488_370 Hb_001488_370 Hb_001369_600--Hb_001488_370 Hb_000589_160 Hb_000589_160 Hb_001369_600--Hb_000589_160 Hb_029879_090--Hb_141194_010 Hb_000594_090 Hb_000594_090 Hb_029879_090--Hb_000594_090 Hb_000103_030 Hb_000103_030 Hb_029879_090--Hb_000103_030 Hb_029879_090--Hb_001348_230 Hb_000045_210 Hb_000045_210 Hb_141194_010--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29502 0.786229 2.50486 4.48103 0.0222745 0.0267846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6501 79.8154 61.3442 6.07344 0.261804

CAGE analysis