Hb_000592_060

Information

Type -
Description -
Location Contig592: 105490-108216
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04450g
description POPTRDRAFT_835110; Ras-related GTP-binding family protein
nr
ID XP_011008350.1
description PREDICTED: ras-related protein RABA6a [Populus euphratica]
swissprot
ID Q9C9U7
description Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1
trembl
ID B9IEB2
description Ras-related GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0015s04450g PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50290: 105554-105942 , PASA_asmbl_50291: 106153-106736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_060 0.0 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
2 Hb_002704_050 0.1119059543 - - cysteine-type peptidase, putative [Ricinus communis]
3 Hb_000431_160 0.1275324865 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
4 Hb_000318_490 0.1287792472 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
5 Hb_000103_550 0.1373234565 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
6 Hb_000281_230 0.1403890752 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
7 Hb_004545_130 0.1411090364 - - uncharacterized protein LOC100305465 [Glycine max]
8 Hb_001159_200 0.1454027235 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
9 Hb_001511_140 0.1478118628 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
10 Hb_000617_110 0.1533316487 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_000613_160 0.1551780448 - - coated vesicle membrane protein, putative [Ricinus communis]
12 Hb_000879_210 0.1552284311 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
13 Hb_141194_010 0.1570946995 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
14 Hb_000788_080 0.1580695003 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
15 Hb_000270_620 0.1618209928 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_002876_370 0.1632420798 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
17 Hb_001369_400 0.1659631131 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
18 Hb_012022_100 0.1665912532 - - CPRD49 family protein [Populus trichocarpa]
19 Hb_002043_120 0.1720425691 - - protein with unknown function [Ricinus communis]
20 Hb_000819_070 0.1733482904 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_060 Hb_000592_060 Hb_002704_050 Hb_002704_050 Hb_000592_060--Hb_002704_050 Hb_000431_160 Hb_000431_160 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130 Hb_012022_100 Hb_012022_100 Hb_002704_050--Hb_012022_100 Hb_000613_160 Hb_000613_160 Hb_002704_050--Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_002704_050--Hb_000788_080 Hb_089100_030 Hb_089100_030 Hb_002704_050--Hb_089100_030 Hb_002043_120 Hb_002043_120 Hb_002704_050--Hb_002043_120 Hb_000617_110 Hb_000617_110 Hb_000431_160--Hb_000617_110 Hb_044653_060 Hb_044653_060 Hb_000431_160--Hb_044653_060 Hb_000431_160--Hb_004545_130 Hb_000879_210 Hb_000879_210 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000819_070 Hb_000819_070 Hb_000431_160--Hb_000819_070 Hb_000123_160 Hb_000123_160 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_000270_620 Hb_000270_620 Hb_000103_550--Hb_000270_620 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_000281_230--Hb_001159_200 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_000281_230--Hb_001369_400 Hb_000281_230--Hb_000819_070 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_000635_080 Hb_000635_080 Hb_004545_130--Hb_000635_080 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_000617_110 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35252 1.0868 1.25933 10.2257 2.0396 7.23801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.9151 126.931 58.0212 8.9929 7.3838

CAGE analysis