Hb_089100_030

Information

Type -
Description -
Location Contig89100: 9093-9561
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089100_030 0.0 - - -
2 Hb_072912_020 0.1245510939 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_089100_020 0.1387563585 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
4 Hb_000544_110 0.1437656036 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
5 Hb_000191_020 0.1498569546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005137_020 0.1535674195 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
7 Hb_002704_050 0.1555532773 - - cysteine-type peptidase, putative [Ricinus communis]
8 Hb_002182_090 0.1574830329 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
9 Hb_011671_400 0.1577591272 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
10 Hb_078633_010 0.1592933882 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_001922_080 0.1604499558 - - Tellurite resistance protein tehA, putative [Ricinus communis]
12 Hb_001102_250 0.1624076417 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
13 Hb_000613_160 0.1624235721 - - coated vesicle membrane protein, putative [Ricinus communis]
14 Hb_001507_070 0.1635660974 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001268_080 0.1653256133 - - catalytic, putative [Ricinus communis]
16 Hb_003211_050 0.1677981325 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_003095_070 0.1684401551 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
18 Hb_001373_100 0.1703548545 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005841_040 0.1760721454 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
20 Hb_000788_080 0.1799336181 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_089100_030 Hb_089100_030 Hb_072912_020 Hb_072912_020 Hb_089100_030--Hb_072912_020 Hb_089100_020 Hb_089100_020 Hb_089100_030--Hb_089100_020 Hb_000544_110 Hb_000544_110 Hb_089100_030--Hb_000544_110 Hb_000191_020 Hb_000191_020 Hb_089100_030--Hb_000191_020 Hb_005137_020 Hb_005137_020 Hb_089100_030--Hb_005137_020 Hb_002704_050 Hb_002704_050 Hb_089100_030--Hb_002704_050 Hb_072912_020--Hb_000544_110 Hb_072912_020--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_072912_020--Hb_001102_250 Hb_078633_010 Hb_078633_010 Hb_072912_020--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_001785_040 Hb_001785_040 Hb_089100_020--Hb_001785_040 Hb_000696_220 Hb_000696_220 Hb_089100_020--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_089100_020--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_089100_020--Hb_003198_010 Hb_089100_020--Hb_000191_020 Hb_003181_050 Hb_003181_050 Hb_089100_020--Hb_003181_050 Hb_000544_110--Hb_005137_020 Hb_000544_110--Hb_001102_250 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_005908_040 Hb_005908_040 Hb_000544_110--Hb_005908_040 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_001604_030 Hb_001604_030 Hb_000191_020--Hb_001604_030 Hb_000191_020--Hb_001268_080 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_000592_060 Hb_000592_060 Hb_002704_050--Hb_000592_060 Hb_012022_100 Hb_012022_100 Hb_002704_050--Hb_012022_100 Hb_000613_160 Hb_000613_160 Hb_002704_050--Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_002704_050--Hb_000788_080 Hb_002043_120 Hb_002043_120 Hb_002704_050--Hb_002043_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0104 0.598632 4.59635 20.249 5.92514 4.18199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5761 140.873 79.4076 5.46665 2.58144

CAGE analysis