Hb_003198_010

Information

Type -
Description -
Location Contig3198: 21814-24595
Sequence    

Annotation

kegg
ID tcc:TCM_016565
description hypothetical protein
nr
ID KHG03437.1
description Valine--tRNA ligase [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MSU2
description Valine--tRNA ligase OS=Gossypium arboreum GN=F383_26732 PE=4 SV=1
Gene Ontology
ID GO:0010997
description valine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33671: 21807-24697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003198_010 0.0 - - Valine--tRNA ligase [Gossypium arboreum]
2 Hb_000696_220 0.0981640022 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
3 Hb_000853_240 0.1066133926 - - -
4 Hb_089100_020 0.1236273796 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
5 Hb_001386_050 0.1282948054 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
6 Hb_003181_050 0.1314066753 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
7 Hb_000032_350 0.1325684957 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008948_050 0.1330773293 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
9 Hb_008066_030 0.1332074097 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
10 Hb_000172_420 0.1388961038 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_004545_130 0.141814827 - - uncharacterized protein LOC100305465 [Glycine max]
12 Hb_004567_020 0.1434498634 - - Small ubiquitin-related modifier 2 [Morus notabilis]
13 Hb_000878_020 0.145402093 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
14 Hb_004755_030 0.1459355831 - - EG964 [Manihot glaziovii]
15 Hb_001785_040 0.147177684 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
16 Hb_000789_110 0.1471949079 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
17 Hb_006588_080 0.1477282551 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
18 Hb_007943_140 0.1498073252 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
19 Hb_000635_080 0.1507557577 - - 60S ribosomal protein L17A [Hevea brasiliensis]
20 Hb_001017_070 0.151839608 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003198_010 Hb_003198_010 Hb_000696_220 Hb_000696_220 Hb_003198_010--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_003198_010--Hb_000853_240 Hb_089100_020 Hb_089100_020 Hb_003198_010--Hb_089100_020 Hb_001386_050 Hb_001386_050 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_000032_350 Hb_000032_350 Hb_003198_010--Hb_000032_350 Hb_000696_220--Hb_000853_240 Hb_000696_220--Hb_089100_020 Hb_000696_220--Hb_000032_350 Hb_000963_030 Hb_000963_030 Hb_000696_220--Hb_000963_030 Hb_000696_220--Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_001785_040 Hb_001785_040 Hb_089100_020--Hb_001785_040 Hb_089100_020--Hb_000853_240 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_089100_020--Hb_003181_050 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_001386_050--Hb_000805_130 Hb_003181_050--Hb_001386_050 Hb_003181_050--Hb_001785_040 Hb_032969_030 Hb_032969_030 Hb_003181_050--Hb_032969_030 Hb_002802_020 Hb_002802_020 Hb_003181_050--Hb_002802_020 Hb_000032_350--Hb_000853_240 Hb_000032_350--Hb_000963_030 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69953 3.17189 7.74795 5.79016 5.98198 2.67646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3858 71.9196 21.646 3.93997 1.67822

CAGE analysis