Hb_004635_060

Information

Type -
Description -
Location Contig4635: 43804-44772
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22850g
description POPTRDRAFT_832046; hypothetical protein
nr
ID XP_002308471.1
description hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
swissprot
ID Q9LXK1
description Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana GN=RPA3A PE=2 SV=1
trembl
ID A9PE07
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22850g PE=2 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 14 kda subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_060 0.0 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
2 Hb_000281_230 0.1257550011 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
3 Hb_000819_070 0.1313543309 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
4 Hb_004474_010 0.1357840833 - - unnamed protein product [Coffea canephora]
5 Hb_006351_110 0.1361807425 - - -
6 Hb_003349_070 0.1384433432 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
7 Hb_004223_260 0.1502468178 - - hypothetical protein F383_09277 [Gossypium arboreum]
8 Hb_000106_100 0.1525871393 - - -
9 Hb_002260_020 0.1560878859 - - -
10 Hb_006745_060 0.1573947618 - - -
11 Hb_034585_050 0.1591215802 - - -
12 Hb_010594_030 0.160421897 - - -
13 Hb_000617_110 0.1631892493 - - translationally controlled tumor protein [Hevea brasiliensis]
14 Hb_010172_100 0.1675091763 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
15 Hb_001159_200 0.1699125271 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
16 Hb_003211_050 0.1723478717 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_004159_050 0.1729159758 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_400 0.1731948834 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
19 Hb_000103_550 0.1736986672 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
20 Hb_000059_350 0.1768535999 - - glutamate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004635_060 Hb_004635_060 Hb_000281_230 Hb_000281_230 Hb_004635_060--Hb_000281_230 Hb_000819_070 Hb_000819_070 Hb_004635_060--Hb_000819_070 Hb_004474_010 Hb_004474_010 Hb_004635_060--Hb_004474_010 Hb_006351_110 Hb_006351_110 Hb_004635_060--Hb_006351_110 Hb_003349_070 Hb_003349_070 Hb_004635_060--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_004635_060--Hb_004223_260 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_000281_230--Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_000819_070--Hb_001369_400 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_000819_070--Hb_000635_080 Hb_004474_010--Hb_003349_070 Hb_004474_010--Hb_004223_260 Hb_008699_040 Hb_008699_040 Hb_004474_010--Hb_008699_040 Hb_004680_020 Hb_004680_020 Hb_004474_010--Hb_004680_020 Hb_001723_080 Hb_001723_080 Hb_004474_010--Hb_001723_080 Hb_010172_100 Hb_010172_100 Hb_006351_110--Hb_010172_100 Hb_004159_050 Hb_004159_050 Hb_006351_110--Hb_004159_050 Hb_001102_250 Hb_001102_250 Hb_006351_110--Hb_001102_250 Hb_000103_550 Hb_000103_550 Hb_006351_110--Hb_000103_550 Hb_000316_100 Hb_000316_100 Hb_006351_110--Hb_000316_100 Hb_010594_030 Hb_010594_030 Hb_006351_110--Hb_010594_030 Hb_001623_430 Hb_001623_430 Hb_003349_070--Hb_001623_430 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_004223_260--Hb_000106_100 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_004223_260--Hb_001623_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6478 1.22993 0.637552 0.415786 13.9101 22.6512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.219 196.829 57.1834 19.6241 9.91065

CAGE analysis