Hb_004680_020

Information

Type -
Description -
Location Contig4680: 55773-65171
Sequence    

Annotation

kegg
ID tcc:TCM_022266
description Gag-pro-like protein
nr
ID XP_012472301.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061ESA1
description Gag-pro-like protein OS=Theobroma cacao GN=TCM_022266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004680_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
2 Hb_004474_010 0.1456366761 - - unnamed protein product [Coffea canephora]
3 Hb_005009_020 0.1558440019 - - -
4 Hb_008699_040 0.1644879508 - - -
5 Hb_075653_020 0.1857867195 - - -
6 Hb_008705_090 0.190373853 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
7 Hb_001723_080 0.1960762581 - - hypothetical protein L484_026139 [Morus notabilis]
8 Hb_007477_090 0.1966913425 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
9 Hb_001007_050 0.1996985853 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
10 Hb_000613_170 0.2003159861 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
11 Hb_003349_070 0.2027361396 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
12 Hb_000847_140 0.2054815427 - - -
13 Hb_005539_210 0.2079903523 - - -
14 Hb_004635_060 0.2101912004 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
15 Hb_080147_090 0.2123199503 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
16 Hb_003777_230 0.2155557383 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
17 Hb_002260_020 0.2181789682 - - -
18 Hb_001792_080 0.2244442875 - - unknown [Populus trichocarpa]
19 Hb_000331_320 0.2249358832 - - -
20 Hb_005211_070 0.2267818135 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]

Gene co-expression network

sample Hb_004680_020 Hb_004680_020 Hb_004474_010 Hb_004474_010 Hb_004680_020--Hb_004474_010 Hb_005009_020 Hb_005009_020 Hb_004680_020--Hb_005009_020 Hb_008699_040 Hb_008699_040 Hb_004680_020--Hb_008699_040 Hb_075653_020 Hb_075653_020 Hb_004680_020--Hb_075653_020 Hb_008705_090 Hb_008705_090 Hb_004680_020--Hb_008705_090 Hb_001723_080 Hb_001723_080 Hb_004680_020--Hb_001723_080 Hb_003349_070 Hb_003349_070 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_004474_010--Hb_008699_040 Hb_004474_010--Hb_001723_080 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_005009_020--Hb_075653_020 Hb_000395_060 Hb_000395_060 Hb_005009_020--Hb_000395_060 Hb_008699_040--Hb_000847_140 Hb_008699_040--Hb_001723_080 Hb_008699_040--Hb_075653_020 Hb_005539_210 Hb_005539_210 Hb_008699_040--Hb_005539_210 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_075653_020--Hb_001723_080 Hb_001007_050 Hb_001007_050 Hb_008705_090--Hb_001007_050 Hb_002260_020 Hb_002260_020 Hb_008705_090--Hb_002260_020 Hb_008705_090--Hb_001723_080 Hb_003777_230 Hb_003777_230 Hb_008705_090--Hb_003777_230 Hb_010172_100 Hb_010172_100 Hb_008705_090--Hb_010172_100 Hb_000454_110 Hb_000454_110 Hb_008705_090--Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0151618 0.0125667 0 0 0.1298 0.183646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.449441 0.57115 0.101835 0.0869607 0

CAGE analysis