Hb_005009_020

Information

Type -
Description -
Location Contig5009: 1350-1913
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005009_020 0.0 - - -
2 Hb_004680_020 0.1558440019 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
3 Hb_000847_140 0.198611034 - - -
4 Hb_008699_040 0.2015674652 - - -
5 Hb_080147_090 0.2042572405 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
6 Hb_075653_020 0.2171731406 - - -
7 Hb_000395_060 0.2306312282 - - -
8 Hb_000331_320 0.2328620177 - - -
9 Hb_012305_120 0.2331005997 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
10 Hb_004474_010 0.2334727399 - - unnamed protein product [Coffea canephora]
11 Hb_000107_640 0.2335150456 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001959_300 0.2410246691 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
13 Hb_000613_170 0.2600291247 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
14 Hb_000039_170 0.2631028735 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
15 Hb_015978_070 0.2634298311 - - -
16 Hb_012807_010 0.2639493485 - - -
17 Hb_000003_350 0.2675387328 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
18 Hb_011344_180 0.2700540398 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
19 Hb_000367_170 0.2726864921 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
20 Hb_003349_070 0.2728979107 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]

Gene co-expression network

sample Hb_005009_020 Hb_005009_020 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_075653_020 Hb_075653_020 Hb_005009_020--Hb_075653_020 Hb_000395_060 Hb_000395_060 Hb_005009_020--Hb_000395_060 Hb_004474_010 Hb_004474_010 Hb_004680_020--Hb_004474_010 Hb_004680_020--Hb_008699_040 Hb_004680_020--Hb_075653_020 Hb_008705_090 Hb_008705_090 Hb_004680_020--Hb_008705_090 Hb_001723_080 Hb_001723_080 Hb_004680_020--Hb_001723_080 Hb_012305_120 Hb_012305_120 Hb_000847_140--Hb_012305_120 Hb_000847_140--Hb_008699_040 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_015978_070 Hb_015978_070 Hb_000847_140--Hb_015978_070 Hb_000847_140--Hb_004474_010 Hb_001623_430 Hb_001623_430 Hb_000847_140--Hb_001623_430 Hb_008699_040--Hb_004474_010 Hb_008699_040--Hb_001723_080 Hb_008699_040--Hb_075653_020 Hb_005539_210 Hb_005539_210 Hb_008699_040--Hb_005539_210 Hb_005690_020 Hb_005690_020 Hb_080147_090--Hb_005690_020 Hb_000243_010 Hb_000243_010 Hb_080147_090--Hb_000243_010 Hb_000003_350 Hb_000003_350 Hb_080147_090--Hb_000003_350 Hb_048197_010 Hb_048197_010 Hb_080147_090--Hb_048197_010 Hb_080147_090--Hb_075653_020 Hb_075653_020--Hb_001623_430 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_075653_020--Hb_001723_080 Hb_005408_040 Hb_005408_040 Hb_000395_060--Hb_005408_040 Hb_000107_640 Hb_000107_640 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.187318 0 0 0.690606 2.35328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21304 4.18188 0.452728 1.47069 0

CAGE analysis