Hb_009954_050

Information

Type -
Description -
Location Contig9954: 24516-32754
Sequence    

Annotation

kegg
ID rcu:RCOM_1460650
description hypothetical protein
nr
ID XP_010277438.1
description PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5B196
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009954_050 0.0 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
2 Hb_155092_010 0.1879221742 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
3 Hb_001140_240 0.2013205058 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_000395_060 0.2274794285 - - -
5 Hb_001348_110 0.2288152511 - - PREDICTED: esterase-like [Jatropha curcas]
6 Hb_001520_020 0.2298960606 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
7 Hb_000011_340 0.2305147574 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
8 Hb_008954_010 0.2425693044 - - -
9 Hb_006922_040 0.2592413043 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_000804_030 0.259778612 - - Protein C14orf111, putative [Ricinus communis]
11 Hb_012799_020 0.2605078785 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_002240_080 0.2691774082 - - -
13 Hb_001186_080 0.2726383073 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
14 Hb_000500_210 0.2746339901 - - -
15 Hb_006588_010 0.2793990639 - - -
16 Hb_005408_040 0.2797067539 - - -
17 Hb_000501_020 0.2797568291 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
18 Hb_000979_050 0.2821733776 - - -
19 Hb_004128_040 0.2823424347 - - -
20 Hb_148262_020 0.2829218017 - - -

Gene co-expression network

sample Hb_009954_050 Hb_009954_050 Hb_155092_010 Hb_155092_010 Hb_009954_050--Hb_155092_010 Hb_001140_240 Hb_001140_240 Hb_009954_050--Hb_001140_240 Hb_000395_060 Hb_000395_060 Hb_009954_050--Hb_000395_060 Hb_001348_110 Hb_001348_110 Hb_009954_050--Hb_001348_110 Hb_001520_020 Hb_001520_020 Hb_009954_050--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_009954_050--Hb_000011_340 Hb_155092_010--Hb_001140_240 Hb_005725_100 Hb_005725_100 Hb_155092_010--Hb_005725_100 Hb_004128_040 Hb_004128_040 Hb_155092_010--Hb_004128_040 Hb_000500_210 Hb_000500_210 Hb_155092_010--Hb_000500_210 Hb_000239_110 Hb_000239_110 Hb_155092_010--Hb_000239_110 Hb_001140_240--Hb_000500_210 Hb_000804_030 Hb_000804_030 Hb_001140_240--Hb_000804_030 Hb_002260_160 Hb_002260_160 Hb_001140_240--Hb_002260_160 Hb_000012_070 Hb_000012_070 Hb_001140_240--Hb_000012_070 Hb_001140_240--Hb_005725_100 Hb_005408_040 Hb_005408_040 Hb_000395_060--Hb_005408_040 Hb_000107_640 Hb_000107_640 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_005009_020 Hb_005009_020 Hb_000395_060--Hb_005009_020 Hb_008954_010 Hb_008954_010 Hb_001348_110--Hb_008954_010 Hb_001348_110--Hb_000804_030 Hb_001348_110--Hb_001520_020 Hb_001348_110--Hb_000011_340 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800 Hb_001520_020--Hb_000011_340 Hb_001520_020--Hb_008954_010 Hb_000487_280 Hb_000487_280 Hb_001520_020--Hb_000487_280 Hb_001520_020--Hb_000804_030 Hb_000011_340--Hb_000487_280 Hb_000011_340--Hb_008954_010 Hb_000011_340--Hb_000804_030 Hb_116349_010 Hb_116349_010 Hb_000011_340--Hb_116349_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0912762 0.0681462 0 0.0378857 0 0.0570298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21337 1.10043 0 0.239958 0

CAGE analysis