Hb_001520_020

Information

Type -
Description -
Location Contig1520: 43010-46932
Sequence    

Annotation

kegg
ID rcu:RCOM_0503980
description cation efflux protein/ zinc transporter, putative
nr
ID XP_012087779.1
description PREDICTED: metal tolerance protein C2 [Jatropha curcas]
swissprot
ID Q6ICY4
description Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=2 SV=1
trembl
ID A0A067JKX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25547 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein c2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001520_020 0.0 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
2 Hb_000011_340 0.0019765903 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
3 Hb_001348_110 0.1356811579 - - PREDICTED: esterase-like [Jatropha curcas]
4 Hb_008954_010 0.1451625919 - - -
5 Hb_000487_280 0.1459721154 - - -
6 Hb_000804_030 0.20876167 - - Protein C14orf111, putative [Ricinus communis]
7 Hb_009954_050 0.2298960606 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
8 Hb_116349_010 0.2305891384 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
9 Hb_001534_020 0.2379633467 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000062_410 0.2501265575 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
11 Hb_000395_060 0.2539266472 - - -
12 Hb_004907_020 0.2671806852 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
13 Hb_004917_050 0.2681306599 - - -
14 Hb_010422_080 0.2701976535 - - -
15 Hb_012163_030 0.2705002726 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
16 Hb_000317_530 0.2790445361 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_001140_240 0.2807132002 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_007393_010 0.2829293195 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
19 Hb_000914_160 0.2829293208 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
20 Hb_006053_010 0.2829293223 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001520_020 Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_001520_020--Hb_000011_340 Hb_001348_110 Hb_001348_110 Hb_001520_020--Hb_001348_110 Hb_008954_010 Hb_008954_010 Hb_001520_020--Hb_008954_010 Hb_000487_280 Hb_000487_280 Hb_001520_020--Hb_000487_280 Hb_000804_030 Hb_000804_030 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_000487_280 Hb_000011_340--Hb_008954_010 Hb_000011_340--Hb_000804_030 Hb_116349_010 Hb_116349_010 Hb_000011_340--Hb_116349_010 Hb_001348_110--Hb_008954_010 Hb_001348_110--Hb_000804_030 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800 Hb_008954_010--Hb_000804_030 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_000487_280--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_000487_280--Hb_010422_080 Hb_000487_280--Hb_008954_010 Hb_000487_280--Hb_001348_110 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_155092_010 Hb_155092_010 Hb_009954_050--Hb_155092_010 Hb_009954_050--Hb_001140_240 Hb_000395_060 Hb_000395_060 Hb_009954_050--Hb_000395_060 Hb_009954_050--Hb_001348_110 Hb_009954_050--Hb_000011_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0663853 0.0521995 0 0.0211193 0

CAGE analysis