Hb_000011_340

Information

Type -
Description -
Location Contig11: 370552-371330
Sequence    

Annotation

kegg
ID rcu:RCOM_0417960
description GTP binding protein, putative
nr
ID XP_012068801.1
description PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
swissprot
ID Q9LUM1
description Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1
trembl
ID A0A067L959
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24633 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_340 0.0 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
2 Hb_001520_020 0.0019765903 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
3 Hb_001348_110 0.1370202861 - - PREDICTED: esterase-like [Jatropha curcas]
4 Hb_000487_280 0.1440302651 - - -
5 Hb_008954_010 0.1458924871 - - -
6 Hb_000804_030 0.2100118326 - - Protein C14orf111, putative [Ricinus communis]
7 Hb_116349_010 0.2296434677 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
8 Hb_009954_050 0.2305147574 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
9 Hb_001534_020 0.2394838113 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000062_410 0.249717566 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
11 Hb_000395_060 0.2542345942 - - -
12 Hb_004907_020 0.2665061181 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
13 Hb_010422_080 0.269041213 - - -
14 Hb_004917_050 0.2693471349 - - -
15 Hb_012163_030 0.2708975371 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
16 Hb_000317_530 0.2782926011 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_001140_240 0.2814409461 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_000098_160 0.2845819668 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003052_160 0.2845819668 - - -
20 Hb_000413_310 0.2845819673 - - -

Gene co-expression network

sample Hb_000011_340 Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_000011_340--Hb_001520_020 Hb_001348_110 Hb_001348_110 Hb_000011_340--Hb_001348_110 Hb_000487_280 Hb_000487_280 Hb_000011_340--Hb_000487_280 Hb_008954_010 Hb_008954_010 Hb_000011_340--Hb_008954_010 Hb_000804_030 Hb_000804_030 Hb_000011_340--Hb_000804_030 Hb_116349_010 Hb_116349_010 Hb_000011_340--Hb_116349_010 Hb_001520_020--Hb_001348_110 Hb_001520_020--Hb_008954_010 Hb_001520_020--Hb_000487_280 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050 Hb_001348_110--Hb_008954_010 Hb_001348_110--Hb_000804_030 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800 Hb_000487_280--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_000487_280--Hb_010422_080 Hb_000487_280--Hb_008954_010 Hb_000487_280--Hb_001348_110 Hb_008954_010--Hb_000804_030 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_002983_060 Hb_002983_060 Hb_116349_010--Hb_002983_060 Hb_116349_010--Hb_010422_080 Hb_116349_010--Hb_001520_020 Hb_001959_300 Hb_001959_300 Hb_116349_010--Hb_001959_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10023 0.0787728 0 0.0322949 0

CAGE analysis