Hb_075060_030

Information

Type -
Description -
Location Contig75060: 18465-21807
Sequence    

Annotation

kegg
ID bvg:104905584
description uncharacterized LOC104905584
nr
ID XP_010251928.1
description PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5B196
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075060_030 0.0 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
2 Hb_000270_800 0.0001121353 - - -
3 Hb_018609_040 0.0002419608 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
4 Hb_034587_030 0.0040864626 - - -
5 Hb_031284_050 0.0206012017 - - -
6 Hb_002392_050 0.0814558431 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
7 Hb_000869_110 0.0816594093 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_039112_010 0.0833668487 - - -
9 Hb_003837_020 0.0988165577 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
10 Hb_001998_060 0.1352547487 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002997_130 0.1452505696 - - -
12 Hb_028462_010 0.1456121886 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
13 Hb_123098_010 0.1456148766 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004899_270 0.1456352869 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
15 Hb_000111_160 0.1456629549 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
16 Hb_018006_020 0.1457239241 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
17 Hb_006053_010 0.1457410259 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_000914_160 0.145753238 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
19 Hb_007393_010 0.1457720496 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_000413_310 0.1458694313 - - -

Gene co-expression network

sample Hb_075060_030 Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_075060_030--Hb_000270_800 Hb_018609_040 Hb_018609_040 Hb_075060_030--Hb_018609_040 Hb_034587_030 Hb_034587_030 Hb_075060_030--Hb_034587_030 Hb_031284_050 Hb_031284_050 Hb_075060_030--Hb_031284_050 Hb_002392_050 Hb_002392_050 Hb_075060_030--Hb_002392_050 Hb_000869_110 Hb_000869_110 Hb_075060_030--Hb_000869_110 Hb_000270_800--Hb_018609_040 Hb_000270_800--Hb_034587_030 Hb_000270_800--Hb_031284_050 Hb_000270_800--Hb_002392_050 Hb_000270_800--Hb_000869_110 Hb_018609_040--Hb_034587_030 Hb_018609_040--Hb_031284_050 Hb_018609_040--Hb_002392_050 Hb_018609_040--Hb_000869_110 Hb_034587_030--Hb_031284_050 Hb_034587_030--Hb_002392_050 Hb_034587_030--Hb_000869_110 Hb_031284_050--Hb_002392_050 Hb_031284_050--Hb_000869_110 Hb_002392_050--Hb_000869_110 Hb_039112_010 Hb_039112_010 Hb_002392_050--Hb_039112_010 Hb_001998_060 Hb_001998_060 Hb_002392_050--Hb_001998_060 Hb_000869_110--Hb_039112_010 Hb_000869_110--Hb_001998_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196115 0.308271 0 0 0

CAGE analysis