Hb_001998_060

Information

Type -
Description -
Location Contig1998: 89620-91060
Sequence    

Annotation

kegg
ID rcu:RCOM_0140290
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533770.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SVH0
description Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
trembl
ID B9T6A1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0140290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_039112_010 0.052163008 - - -
3 Hb_000869_110 0.0538731029 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002392_050 0.0540769603 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
5 Hb_115720_010 0.0695433105 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
6 Hb_031284_050 0.1147933114 - - -
7 Hb_034587_030 0.1311994521 - - -
8 Hb_018609_040 0.1350146797 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
9 Hb_000270_800 0.1351434908 - - -
10 Hb_075060_030 0.1352547487 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
11 Hb_003837_020 0.1414023447 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
12 Hb_002903_010 0.1543696432 - - 60S ribosomal protein L37-3 [Morus notabilis]
13 Hb_000504_010 0.160777706 - - oleosin 18.2 kDa-like [Jatropha curcas]
14 Hb_000804_030 0.2025130944 - - Protein C14orf111, putative [Ricinus communis]
15 Hb_002788_040 0.2080032669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000184_190 0.2124351971 - - hypothetical protein VITISV_016970 [Vitis vinifera]
17 Hb_002498_090 0.2142191026 - - -
18 Hb_001504_320 0.2533050232 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
19 Hb_001386_080 0.2561448967 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
20 Hb_001348_200 0.2621148006 - - -

Gene co-expression network

sample Hb_001998_060 Hb_001998_060 Hb_039112_010 Hb_039112_010 Hb_001998_060--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_001998_060--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_001998_060--Hb_002392_050 Hb_115720_010 Hb_115720_010 Hb_001998_060--Hb_115720_010 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040 Hb_002392_050--Hb_031284_050 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040 Hb_000504_010 Hb_000504_010 Hb_115720_010--Hb_000504_010 Hb_115720_010--Hb_039112_010 Hb_115720_010--Hb_000869_110 Hb_115720_010--Hb_002392_050 Hb_002903_010 Hb_002903_010 Hb_115720_010--Hb_002903_010 Hb_031284_050--Hb_034587_030 Hb_031284_050--Hb_018609_040 Hb_000270_800 Hb_000270_800 Hb_031284_050--Hb_000270_800 Hb_075060_030 Hb_075060_030 Hb_031284_050--Hb_075060_030 Hb_034587_030--Hb_018609_040 Hb_034587_030--Hb_000270_800 Hb_034587_030--Hb_075060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118612 0.372792 0 0 0

CAGE analysis