Hb_000504_010

Information

Type -
Description -
Location Contig504: 1744-2100
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10810g
description POPTRDRAFT_736170; oleosin family protein
nr
ID NP_001295667.1
description oleosin 18.2 kDa-like [Jatropha curcas]
swissprot
ID Q9SS98
description Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=2 SV=1
trembl
ID A8WE55
description 16.6 kDa oleosin OS=Jatropha curcas GN=Ole16.6 PE=2 SV=2
Gene Ontology
ID GO:0012511
description oleosin kda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_010 0.0 - - oleosin 18.2 kDa-like [Jatropha curcas]
2 Hb_115720_010 0.1178335316 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
3 Hb_002903_010 0.1423192292 - - 60S ribosomal protein L37-3 [Morus notabilis]
4 Hb_001998_060 0.160777706 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002788_040 0.1849308885 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005725_110 0.2009532645 - - conserved hypothetical protein [Ricinus communis]
7 Hb_039112_010 0.2021542219 - - -
8 Hb_000869_110 0.2035809551 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002392_050 0.2037512628 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
10 Hb_001892_090 0.2257213375 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000853_130 0.2331696925 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
12 Hb_000002_170 0.2368936653 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
13 Hb_000804_030 0.2398293843 - - Protein C14orf111, putative [Ricinus communis]
14 Hb_000284_190 0.2421027563 - - lactoylglutathione lyase, putative [Ricinus communis]
15 Hb_002391_330 0.2487003021 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012573_010 0.2506435462 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
17 Hb_034661_020 0.2507634409 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
18 Hb_006277_070 0.2558292402 - - conserved hypothetical protein [Ricinus communis]
19 Hb_031284_050 0.2561707431 - - -
20 Hb_000012_070 0.2635126174 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000504_010 Hb_000504_010 Hb_115720_010 Hb_115720_010 Hb_000504_010--Hb_115720_010 Hb_002903_010 Hb_002903_010 Hb_000504_010--Hb_002903_010 Hb_001998_060 Hb_001998_060 Hb_000504_010--Hb_001998_060 Hb_002788_040 Hb_002788_040 Hb_000504_010--Hb_002788_040 Hb_005725_110 Hb_005725_110 Hb_000504_010--Hb_005725_110 Hb_039112_010 Hb_039112_010 Hb_000504_010--Hb_039112_010 Hb_115720_010--Hb_001998_060 Hb_115720_010--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_115720_010--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_115720_010--Hb_002392_050 Hb_115720_010--Hb_002903_010 Hb_002903_010--Hb_001998_060 Hb_002903_010--Hb_039112_010 Hb_000804_030 Hb_000804_030 Hb_002903_010--Hb_000804_030 Hb_002903_010--Hb_000869_110 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_001998_060--Hb_002392_050 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_002788_040--Hb_115720_010 Hb_002788_040--Hb_001998_060 Hb_001892_090 Hb_001892_090 Hb_002788_040--Hb_001892_090 Hb_002788_040--Hb_039112_010 Hb_002788_040--Hb_000869_110 Hb_007477_040 Hb_007477_040 Hb_005725_110--Hb_007477_040 Hb_008954_010 Hb_008954_010 Hb_005725_110--Hb_008954_010 Hb_005725_110--Hb_002903_010 Hb_005725_110--Hb_000804_030 Hb_000853_130 Hb_000853_130 Hb_005725_110--Hb_000853_130 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501175 3.34748 0 0.0867674 0

CAGE analysis