Hb_002788_040

Information

Type -
Description -
Location Contig2788: 94579-94917
Sequence    

Annotation

kegg
ID rcu:RCOM_0864480
description hypothetical protein
nr
ID XP_002519815.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0864480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002788_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_115720_010 0.1688551443 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
3 Hb_000504_010 0.1849308885 - - oleosin 18.2 kDa-like [Jatropha curcas]
4 Hb_001998_060 0.2080032669 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001892_090 0.2391749364 - - conserved hypothetical protein [Ricinus communis]
6 Hb_039112_010 0.2453370782 - - -
7 Hb_000869_110 0.2466353944 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002392_050 0.2467904253 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
9 Hb_002903_010 0.2474803474 - - 60S ribosomal protein L37-3 [Morus notabilis]
10 Hb_000184_190 0.2478242651 - - hypothetical protein VITISV_016970 [Vitis vinifera]
11 Hb_000284_190 0.2659099203 - - lactoylglutathione lyase, putative [Ricinus communis]
12 Hb_002228_090 0.2724907786 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
13 Hb_001277_080 0.2745169179 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
14 Hb_004968_070 0.278779808 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012573_010 0.2834060941 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
16 Hb_000002_170 0.2836839448 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
17 Hb_000016_070 0.284659582 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
18 Hb_000019_020 0.284659582 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
19 Hb_000019_160 0.284659582 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
20 Hb_000029_230 0.284659582 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_002788_040 Hb_002788_040 Hb_115720_010 Hb_115720_010 Hb_002788_040--Hb_115720_010 Hb_000504_010 Hb_000504_010 Hb_002788_040--Hb_000504_010 Hb_001998_060 Hb_001998_060 Hb_002788_040--Hb_001998_060 Hb_001892_090 Hb_001892_090 Hb_002788_040--Hb_001892_090 Hb_039112_010 Hb_039112_010 Hb_002788_040--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_002788_040--Hb_000869_110 Hb_115720_010--Hb_001998_060 Hb_115720_010--Hb_000504_010 Hb_115720_010--Hb_039112_010 Hb_115720_010--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_115720_010--Hb_002392_050 Hb_002903_010 Hb_002903_010 Hb_115720_010--Hb_002903_010 Hb_000504_010--Hb_002903_010 Hb_000504_010--Hb_001998_060 Hb_005725_110 Hb_005725_110 Hb_000504_010--Hb_005725_110 Hb_000504_010--Hb_039112_010 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_001998_060--Hb_002392_050 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_015057_030 Hb_015057_030 Hb_001892_090--Hb_015057_030 Hb_006277_070 Hb_006277_070 Hb_001892_090--Hb_006277_070 Hb_000016_070 Hb_000016_070 Hb_001892_090--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_001892_090--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_001892_090--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_001892_090--Hb_000029_230 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117504 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28033 2.20376 0 0 0

CAGE analysis