Hb_115720_010

Information

Type -
Description -
Location Contig115720: 2270-2684
Sequence    

Annotation

kegg
ID rcu:RCOM_1217180
description calcium ion binding protein, putative
nr
ID XP_012077619.1
description PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12882 PE=4 SV=1
Gene Ontology
ID GO:0046872
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115720_010 0.0 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
2 Hb_001998_060 0.0695433105 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000504_010 0.1178335316 - - oleosin 18.2 kDa-like [Jatropha curcas]
4 Hb_039112_010 0.1214353252 - - -
5 Hb_000869_110 0.1231333675 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002392_050 0.1233357759 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
7 Hb_002903_010 0.1619837497 - - 60S ribosomal protein L37-3 [Morus notabilis]
8 Hb_002788_040 0.1688551443 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031284_050 0.1835152378 - - -
10 Hb_003837_020 0.1978303083 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
11 Hb_034587_030 0.1997442898 - - -
12 Hb_018609_040 0.2035166067 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
13 Hb_000270_800 0.203643958 - - -
14 Hb_075060_030 0.2037539543 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
15 Hb_002498_090 0.2247385201 - - -
16 Hb_001892_090 0.2364233063 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000804_030 0.2460089525 - - Protein C14orf111, putative [Ricinus communis]
18 Hb_000184_190 0.2482829878 - - hypothetical protein VITISV_016970 [Vitis vinifera]
19 Hb_000284_190 0.2653855082 - - lactoylglutathione lyase, putative [Ricinus communis]
20 Hb_001348_200 0.2697686317 - - -

Gene co-expression network

sample Hb_115720_010 Hb_115720_010 Hb_001998_060 Hb_001998_060 Hb_115720_010--Hb_001998_060 Hb_000504_010 Hb_000504_010 Hb_115720_010--Hb_000504_010 Hb_039112_010 Hb_039112_010 Hb_115720_010--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_115720_010--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_115720_010--Hb_002392_050 Hb_002903_010 Hb_002903_010 Hb_115720_010--Hb_002903_010 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_001998_060--Hb_002392_050 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_000504_010--Hb_002903_010 Hb_000504_010--Hb_001998_060 Hb_002788_040 Hb_002788_040 Hb_000504_010--Hb_002788_040 Hb_005725_110 Hb_005725_110 Hb_000504_010--Hb_005725_110 Hb_000504_010--Hb_039112_010 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040 Hb_002392_050--Hb_031284_050 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040 Hb_002903_010--Hb_001998_060 Hb_002903_010--Hb_039112_010 Hb_000804_030 Hb_000804_030 Hb_002903_010--Hb_000804_030 Hb_002903_010--Hb_000869_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 1.14071 0 0 0

CAGE analysis