Hb_002903_010

Information

Type -
Description -
Location Contig2903: 8793-12575
Sequence    

Annotation

kegg
ID cmo:103500584
description 60S ribosomal protein L37-3-like
nr
ID XP_010098066.1
description 60S ribosomal protein L37-3 [Morus notabilis]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID W9RUU7
description Ribosomal protein L37 OS=Morus notabilis GN=L484_026198 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30434: 11311-11468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_010 0.0 - - 60S ribosomal protein L37-3 [Morus notabilis]
2 Hb_000504_010 0.1423192292 - - oleosin 18.2 kDa-like [Jatropha curcas]
3 Hb_001998_060 0.1543696432 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_115720_010 0.1619837497 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
5 Hb_039112_010 0.1679827126 - - -
6 Hb_000804_030 0.168653356 - - Protein C14orf111, putative [Ricinus communis]
7 Hb_000869_110 0.1686761368 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002392_050 0.1687597314 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
9 Hb_003837_020 0.188968879 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
10 Hb_031284_050 0.2011721514 - - -
11 Hb_034587_030 0.2119826994 - - -
12 Hb_018609_040 0.2145927645 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
13 Hb_000270_800 0.2146814786 - - -
14 Hb_075060_030 0.2147581343 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
15 Hb_005725_110 0.2193778254 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000284_190 0.2225071682 - - lactoylglutathione lyase, putative [Ricinus communis]
17 Hb_000853_130 0.2234890571 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
18 Hb_008954_010 0.2245975369 - - -
19 Hb_001140_240 0.2256048515 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_001348_110 0.2313734998 - - PREDICTED: esterase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002903_010 Hb_002903_010 Hb_000504_010 Hb_000504_010 Hb_002903_010--Hb_000504_010 Hb_001998_060 Hb_001998_060 Hb_002903_010--Hb_001998_060 Hb_115720_010 Hb_115720_010 Hb_002903_010--Hb_115720_010 Hb_039112_010 Hb_039112_010 Hb_002903_010--Hb_039112_010 Hb_000804_030 Hb_000804_030 Hb_002903_010--Hb_000804_030 Hb_000869_110 Hb_000869_110 Hb_002903_010--Hb_000869_110 Hb_000504_010--Hb_115720_010 Hb_000504_010--Hb_001998_060 Hb_002788_040 Hb_002788_040 Hb_000504_010--Hb_002788_040 Hb_005725_110 Hb_005725_110 Hb_000504_010--Hb_005725_110 Hb_000504_010--Hb_039112_010 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_001998_060--Hb_002392_050 Hb_001998_060--Hb_115720_010 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_115720_010--Hb_039112_010 Hb_115720_010--Hb_000869_110 Hb_115720_010--Hb_002392_050 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_001348_110 Hb_001348_110 Hb_000804_030--Hb_001348_110 Hb_008954_010 Hb_008954_010 Hb_000804_030--Hb_008954_010 Hb_000804_030--Hb_031284_050 Hb_000804_030--Hb_034587_030 Hb_000804_030--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.061863 0 0.0498331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29944 4.49193 0 0.169455 0

CAGE analysis