Hb_000029_230

Information

Type -
Description -
Location Contig29: 224909-225358
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_496947
description hypothetical protein
nr
ID XP_002866753.1
description hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID D7MMF5
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496947 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_070 0.0 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
2 Hb_000019_020 0.0 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
3 Hb_000019_160 0.0 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
4 Hb_000029_230 0.0 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
5 Hb_000032_170 0.0 - - -
6 Hb_000042_170 0.0 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
7 Hb_000050_210 0.0 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
8 Hb_000083_100 0.0 - - -
9 Hb_000094_270 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_000099_100 0.0 - - -
11 Hb_000107_600 0.0 - - -
12 Hb_000141_100 0.0 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Jatropha curcas]
13 Hb_000155_220 0.0 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 9-like [Jatropha curcas]
14 Hb_000161_110 0.0 - - hypothetical protein POPTR_0012s02100g [Populus trichocarpa]
15 Hb_000175_570 0.0 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
16 Hb_000190_250 0.0 - - -
17 Hb_000223_130 0.0 - - PREDICTED: uncharacterized protein LOC104891112 [Beta vulgaris subsp. vulgaris]
18 Hb_000236_260 0.0 - - hypothetical protein OsI_23653 [Oryza sativa Indica Group]
19 Hb_000240_050 0.0 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
20 Hb_000291_230 0.0 - - PREDICTED: aminotransferase ALD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_070 Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_000016_070--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_000016_070--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_000016_070--Hb_000029_230 Hb_000032_170 Hb_000032_170 Hb_000016_070--Hb_000032_170 Hb_000042_170 Hb_000042_170 Hb_000016_070--Hb_000042_170 Hb_000050_210 Hb_000050_210 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.126082 0 0 0

CAGE analysis