Hb_007477_040

Information

Type -
Description -
Location Contig7477: 42663-43521
Sequence    

Annotation

kegg
ID rcu:RCOM_0527790
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002525352.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9FQA3
description Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1
trembl
ID B9SH83
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0527790 PE=3 SV=1
Gene Ontology
ID GO:0016829
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_040 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_005725_110 0.1567441249 - - conserved hypothetical protein [Ricinus communis]
3 Hb_187134_010 0.2563120723 - - -
4 Hb_007273_010 0.2574690807 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
5 Hb_185736_010 0.2595206037 - - -
6 Hb_011016_040 0.2607801489 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_000143_040 0.2607855057 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
8 Hb_000258_190 0.2609097933 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_003388_090 0.261016737 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
10 Hb_000265_180 0.2612108998 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
11 Hb_004881_110 0.2616234729 - - -
12 Hb_001369_330 0.2616403452 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010120_010 0.2617937117 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_010267_010 0.2620019195 - - -
15 Hb_017170_010 0.2661027674 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
16 Hb_035492_010 0.2676777312 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_000635_120 0.268774938 - - -
18 Hb_001999_110 0.2688114154 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
19 Hb_014497_080 0.2688917668 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
20 Hb_011457_060 0.2691323159 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]

Gene co-expression network

sample Hb_007477_040 Hb_007477_040 Hb_005725_110 Hb_005725_110 Hb_007477_040--Hb_005725_110 Hb_187134_010 Hb_187134_010 Hb_007477_040--Hb_187134_010 Hb_007273_010 Hb_007273_010 Hb_007477_040--Hb_007273_010 Hb_185736_010 Hb_185736_010 Hb_007477_040--Hb_185736_010 Hb_011016_040 Hb_011016_040 Hb_007477_040--Hb_011016_040 Hb_000143_040 Hb_000143_040 Hb_007477_040--Hb_000143_040 Hb_000504_010 Hb_000504_010 Hb_005725_110--Hb_000504_010 Hb_008954_010 Hb_008954_010 Hb_005725_110--Hb_008954_010 Hb_002903_010 Hb_002903_010 Hb_005725_110--Hb_002903_010 Hb_000804_030 Hb_000804_030 Hb_005725_110--Hb_000804_030 Hb_000853_130 Hb_000853_130 Hb_005725_110--Hb_000853_130 Hb_187134_010--Hb_007273_010 Hb_187134_010--Hb_185736_010 Hb_000111_020 Hb_000111_020 Hb_187134_010--Hb_000111_020 Hb_187134_010--Hb_011016_040 Hb_187134_010--Hb_000143_040 Hb_000258_190 Hb_000258_190 Hb_187134_010--Hb_000258_190 Hb_007273_010--Hb_185736_010 Hb_007273_010--Hb_000111_020 Hb_096292_010 Hb_096292_010 Hb_007273_010--Hb_096292_010 Hb_001627_030 Hb_001627_030 Hb_007273_010--Hb_001627_030 Hb_007273_010--Hb_011016_040 Hb_185736_010--Hb_000111_020 Hb_185736_010--Hb_001627_030 Hb_185736_010--Hb_096292_010 Hb_185736_010--Hb_011016_040 Hb_011016_040--Hb_000143_040 Hb_011016_040--Hb_000258_190 Hb_003388_090 Hb_003388_090 Hb_011016_040--Hb_003388_090 Hb_000265_180 Hb_000265_180 Hb_011016_040--Hb_000265_180 Hb_004881_110 Hb_004881_110 Hb_011016_040--Hb_004881_110 Hb_001369_330 Hb_001369_330 Hb_011016_040--Hb_001369_330 Hb_000143_040--Hb_000258_190 Hb_000143_040--Hb_003388_090 Hb_000143_040--Hb_000265_180 Hb_000143_040--Hb_004881_110 Hb_000143_040--Hb_001369_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0415835 0 0 0.0396483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192864 1.51584 0 0.434364 0

CAGE analysis