Hb_001140_240

Information

Type -
Description -
Location Contig1140: 254760-255925
Sequence    

Annotation

kegg
ID rcu:RCOM_1495980
description metal ion binding protein, putative
nr
ID XP_002510790.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9B5
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1495980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description metal ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04204: 254804-255100 , PASA_asmbl_04205: 255403-255891 , PASA_asmbl_04206: 255156-255891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_240 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_009954_050 0.2013205058 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
3 Hb_000500_210 0.2036232555 - - -
4 Hb_000804_030 0.2057356334 - - Protein C14orf111, putative [Ricinus communis]
5 Hb_002260_160 0.2087682009 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000012_070 0.2106427755 - - cytochrome P450, putative [Ricinus communis]
7 Hb_005725_100 0.211213681 - - hypothetical protein 30 [Hevea brasiliensis]
8 Hb_008954_010 0.2134211717 - - -
9 Hb_001348_110 0.2143707084 - - PREDICTED: esterase-like [Jatropha curcas]
10 Hb_000258_180 0.215573636 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
11 Hb_001842_120 0.2157601571 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_183612_080 0.2207823987 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
13 Hb_002903_010 0.2256048515 - - 60S ribosomal protein L37-3 [Morus notabilis]
14 Hb_000284_190 0.2275901272 - - lactoylglutathione lyase, putative [Ricinus communis]
15 Hb_000300_210 0.2278306671 - - gd2b, putative [Ricinus communis]
16 Hb_000239_110 0.2282363852 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
17 Hb_012022_100 0.2309883538 - - CPRD49 family protein [Populus trichocarpa]
18 Hb_155092_010 0.2330898847 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
19 Hb_003226_240 0.2335533384 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
20 Hb_004429_110 0.2337730544 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]

Gene co-expression network

sample Hb_001140_240 Hb_001140_240 Hb_009954_050 Hb_009954_050 Hb_001140_240--Hb_009954_050 Hb_000500_210 Hb_000500_210 Hb_001140_240--Hb_000500_210 Hb_000804_030 Hb_000804_030 Hb_001140_240--Hb_000804_030 Hb_002260_160 Hb_002260_160 Hb_001140_240--Hb_002260_160 Hb_000012_070 Hb_000012_070 Hb_001140_240--Hb_000012_070 Hb_005725_100 Hb_005725_100 Hb_001140_240--Hb_005725_100 Hb_155092_010 Hb_155092_010 Hb_009954_050--Hb_155092_010 Hb_000395_060 Hb_000395_060 Hb_009954_050--Hb_000395_060 Hb_001348_110 Hb_001348_110 Hb_009954_050--Hb_001348_110 Hb_001520_020 Hb_001520_020 Hb_009954_050--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_009954_050--Hb_000011_340 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_000804_030--Hb_001348_110 Hb_008954_010 Hb_008954_010 Hb_000804_030--Hb_008954_010 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_100180_010 Hb_100180_010 Hb_002260_160--Hb_100180_010 Hb_007218_100 Hb_007218_100 Hb_002260_160--Hb_007218_100 Hb_002260_160--Hb_004429_110 Hb_004907_020 Hb_004907_020 Hb_002260_160--Hb_004907_020 Hb_021888_120 Hb_021888_120 Hb_002260_160--Hb_021888_120 Hb_000258_180 Hb_000258_180 Hb_000012_070--Hb_000258_180 Hb_000062_300 Hb_000062_300 Hb_000012_070--Hb_000062_300 Hb_032202_250 Hb_032202_250 Hb_000012_070--Hb_032202_250 Hb_012573_010 Hb_012573_010 Hb_000012_070--Hb_012573_010 Hb_000284_190 Hb_000284_190 Hb_000012_070--Hb_000284_190 Hb_034482_040 Hb_034482_040 Hb_000012_070--Hb_034482_040 Hb_005725_100--Hb_004429_110 Hb_000239_110 Hb_000239_110 Hb_005725_100--Hb_000239_110 Hb_183612_080 Hb_183612_080 Hb_005725_100--Hb_183612_080 Hb_001266_030 Hb_001266_030 Hb_005725_100--Hb_001266_030 Hb_000879_210 Hb_000879_210 Hb_005725_100--Hb_000879_210 Hb_000617_110 Hb_000617_110 Hb_005725_100--Hb_000617_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2306 30.8422 3.19835 34.1734 1.44931 12.842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
611.599 1109.34 42.0583 133.271 13.2544

CAGE analysis