Hb_021888_120

Information

Type -
Description -
Location Contig21888: 106687-107610
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00650g
description POPTRDRAFT_578124; CCR4-NOT transcription complex family protein
nr
ID XP_012065994.1
description PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
swissprot
ID O64773
description Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1
trembl
ID A0A067L7E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26681 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccr4-associated factor 1 homolog 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_120 0.0 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
2 Hb_007218_100 0.1741047691 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_000096_130 0.174108922 - - hypothetical protein 23 [Hevea brasiliensis]
4 Hb_007951_130 0.1999015381 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
5 Hb_007317_080 0.2019148531 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
6 Hb_000692_020 0.2023806379 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
7 Hb_002260_160 0.2085533247 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000152_100 0.2091081724 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
9 Hb_021888_050 0.2164677995 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
10 Hb_100180_010 0.2202079803 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_005568_080 0.2261081547 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033772_050 0.238296164 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
13 Hb_002374_380 0.2401154665 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
14 Hb_140049_010 0.2430756002 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
15 Hb_000948_080 0.2436112116 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
16 Hb_004296_020 0.2455161239 - - unnamed protein product [Coffea canephora]
17 Hb_003095_040 0.2459182213 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
18 Hb_013839_010 0.2489739522 - - Angio-associated migratory cell protein, putative [Ricinus communis]
19 Hb_000836_140 0.2502657471 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
20 Hb_003052_220 0.2508018763 - - -

Gene co-expression network

sample Hb_021888_120 Hb_021888_120 Hb_007218_100 Hb_007218_100 Hb_021888_120--Hb_007218_100 Hb_000096_130 Hb_000096_130 Hb_021888_120--Hb_000096_130 Hb_007951_130 Hb_007951_130 Hb_021888_120--Hb_007951_130 Hb_007317_080 Hb_007317_080 Hb_021888_120--Hb_007317_080 Hb_000692_020 Hb_000692_020 Hb_021888_120--Hb_000692_020 Hb_002260_160 Hb_002260_160 Hb_021888_120--Hb_002260_160 Hb_100180_010 Hb_100180_010 Hb_007218_100--Hb_100180_010 Hb_000152_100 Hb_000152_100 Hb_007218_100--Hb_000152_100 Hb_010827_020 Hb_010827_020 Hb_007218_100--Hb_010827_020 Hb_007218_100--Hb_002260_160 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_000836_140 Hb_000836_140 Hb_000096_130--Hb_000836_140 Hb_013839_010 Hb_013839_010 Hb_000096_130--Hb_013839_010 Hb_002603_060 Hb_002603_060 Hb_000096_130--Hb_002603_060 Hb_002828_040 Hb_002828_040 Hb_000096_130--Hb_002828_040 Hb_002636_080 Hb_002636_080 Hb_000096_130--Hb_002636_080 Hb_021888_050 Hb_021888_050 Hb_000096_130--Hb_021888_050 Hb_139138_010 Hb_139138_010 Hb_007951_130--Hb_139138_010 Hb_007951_130--Hb_000096_130 Hb_011909_140 Hb_011909_140 Hb_007951_130--Hb_011909_140 Hb_000483_480 Hb_000483_480 Hb_007951_130--Hb_000483_480 Hb_000418_080 Hb_000418_080 Hb_007951_130--Hb_000418_080 Hb_002374_380 Hb_002374_380 Hb_007317_080--Hb_002374_380 Hb_000694_060 Hb_000694_060 Hb_007317_080--Hb_000694_060 Hb_000270_740 Hb_000270_740 Hb_007317_080--Hb_000270_740 Hb_017170_030 Hb_017170_030 Hb_007317_080--Hb_017170_030 Hb_001675_030 Hb_001675_030 Hb_007317_080--Hb_001675_030 Hb_000692_020--Hb_002603_060 Hb_004567_020 Hb_004567_020 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000692_020--Hb_000483_480 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_002260_160--Hb_100180_010 Hb_004429_110 Hb_004429_110 Hb_002260_160--Hb_004429_110 Hb_004907_020 Hb_004907_020 Hb_002260_160--Hb_004907_020 Hb_001140_240 Hb_001140_240 Hb_002260_160--Hb_001140_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103774 0.792527 0.0570522 0.327562 0.0734708 0.0277324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39936 2.15699 0.402897 0.780501 0

CAGE analysis