Hb_000096_130

Information

Type -
Description -
Location Contig96: 131975-132933
Sequence    

Annotation

kegg
ID rcu:RCOM_0581020
description hypothetical protein
nr
ID ADR71300.1
description hypothetical protein 23 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMR3
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63692: 132104-132932
cDNA
(Sanger)
(ID:Location)		 012_B09.ab1: 132104-132932 , 014_D15.ab1: 132128-132909 , 018_H16.ab1: 132104-132932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_130 0.0 - - hypothetical protein 23 [Hevea brasiliensis]
2 Hb_000836_140 0.1364976101 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
3 Hb_013839_010 0.1572504333 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_002603_060 0.1631983949 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
5 Hb_002828_040 0.1666215906 - - transmembrane protein, putative [Medicago truncatula]
6 Hb_002636_080 0.170959143 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
7 Hb_021888_050 0.171614635 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
8 Hb_021888_120 0.174108922 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
9 Hb_000275_130 0.174601316 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
10 Hb_000692_010 0.184340776 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
11 Hb_008699_020 0.1849946989 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
12 Hb_000390_140 0.1852806748 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
13 Hb_010827_020 0.1870286042 - - 60S ribosomal protein L17B [Hevea brasiliensis]
14 Hb_000506_120 0.1873396588 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
15 Hb_002929_050 0.1913432936 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
16 Hb_000317_400 0.1940547825 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
17 Hb_002341_020 0.1944955085 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
18 Hb_007432_020 0.1952786361 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
19 Hb_000329_250 0.1968491752 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
20 Hb_000152_100 0.1975278678 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_130 Hb_000096_130 Hb_000836_140 Hb_000836_140 Hb_000096_130--Hb_000836_140 Hb_013839_010 Hb_013839_010 Hb_000096_130--Hb_013839_010 Hb_002603_060 Hb_002603_060 Hb_000096_130--Hb_002603_060 Hb_002828_040 Hb_002828_040 Hb_000096_130--Hb_002828_040 Hb_002636_080 Hb_002636_080 Hb_000096_130--Hb_002636_080 Hb_021888_050 Hb_021888_050 Hb_000096_130--Hb_021888_050 Hb_000483_250 Hb_000483_250 Hb_000836_140--Hb_000483_250 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_060618_010 Hb_060618_010 Hb_000836_140--Hb_060618_010 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_000451_060 Hb_000451_060 Hb_013839_010--Hb_000451_060 Hb_153544_010 Hb_153544_010 Hb_013839_010--Hb_153544_010 Hb_000191_030 Hb_000191_030 Hb_013839_010--Hb_000191_030 Hb_013839_010--Hb_008699_020 Hb_116608_010 Hb_116608_010 Hb_013839_010--Hb_116608_010 Hb_001277_320 Hb_001277_320 Hb_013839_010--Hb_001277_320 Hb_029904_040 Hb_029904_040 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_002828_040--Hb_029904_040 Hb_001700_020 Hb_001700_020 Hb_002828_040--Hb_001700_020 Hb_002828_040--Hb_008699_020 Hb_009113_050 Hb_009113_050 Hb_002828_040--Hb_009113_050 Hb_002828_040--Hb_000836_140 Hb_000329_250 Hb_000329_250 Hb_002828_040--Hb_000329_250 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0342 76.8656 15.1191 60.4655 14.7539 19.2115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
263.399 219.979 60.9132 109.157 9.43538

CAGE analysis