Hb_000390_140

Information

Type -
Description -
Location Contig390: 164258-164830
Sequence    

Annotation

kegg
ID rcu:RCOM_1327790
description hypothetical protein
nr
ID XP_012070243.1
description PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
swissprot
ID Q9M8T3
description Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2
trembl
ID A0A067L4V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39095: 164017-164980
cDNA
(Sanger)
(ID:Location)		 003_K24.ab1: 164615-164980 , 009_P09.ab1: 164162-164913

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_140 0.0 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
2 Hb_000923_090 0.1061080732 - - -
3 Hb_008695_050 0.1204367481 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000072_210 0.1350349736 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
5 Hb_002609_160 0.1435037102 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
6 Hb_002636_080 0.1440428935 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
7 Hb_004734_040 0.1457407125 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
8 Hb_001369_250 0.1538841449 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
9 Hb_104265_040 0.1572441126 - - conserved hypothetical protein [Ricinus communis]
10 Hb_116608_010 0.1578696918 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
11 Hb_000207_400 0.1587755371 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
12 Hb_000414_130 0.1588534848 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
13 Hb_000407_070 0.1609725919 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
14 Hb_007894_060 0.1610494356 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
15 Hb_018124_010 0.1620541 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
16 Hb_002042_130 0.1621671817 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
17 Hb_000525_020 0.1623482 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_165669_010 0.1626218855 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
19 Hb_008226_080 0.1646853416 - - Protein LRP16, putative [Ricinus communis]
20 Hb_000210_120 0.164691094 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_140 Hb_000390_140 Hb_000923_090 Hb_000923_090 Hb_000390_140--Hb_000923_090 Hb_008695_050 Hb_008695_050 Hb_000390_140--Hb_008695_050 Hb_000072_210 Hb_000072_210 Hb_000390_140--Hb_000072_210 Hb_002609_160 Hb_002609_160 Hb_000390_140--Hb_002609_160 Hb_002636_080 Hb_002636_080 Hb_000390_140--Hb_002636_080 Hb_004734_040 Hb_004734_040 Hb_000390_140--Hb_004734_040 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_000923_090--Hb_002609_160 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_005307_050 Hb_005307_050 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_010560_030 Hb_010560_030 Hb_000072_210--Hb_010560_030 Hb_000327_380 Hb_000327_380 Hb_000072_210--Hb_000327_380 Hb_000072_210--Hb_000923_090 Hb_004052_050 Hb_004052_050 Hb_000072_210--Hb_004052_050 Hb_001123_210 Hb_001123_210 Hb_000072_210--Hb_001123_210 Hb_000030_200 Hb_000030_200 Hb_002609_160--Hb_000030_200 Hb_006915_040 Hb_006915_040 Hb_002609_160--Hb_006915_040 Hb_150930_010 Hb_150930_010 Hb_002609_160--Hb_150930_010 Hb_002609_160--Hb_005307_050 Hb_000087_130 Hb_000087_130 Hb_002609_160--Hb_000087_130 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_000903_060 Hb_000903_060 Hb_004734_040--Hb_000903_060 Hb_004734_040--Hb_001653_020 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7175 21.3083 9.73464 37.7376 3.72209 10.3093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.5124 46.1782 15.9502 31.5491 10.1256

CAGE analysis