Hb_000207_400

Information

Type -
Description -
Location Contig207: 557338-563609
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11970g
description TYROSINE PHOSPHATASE 1 family protein
nr
ID XP_012081085.1
description PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
swissprot
ID O82656
description Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1
trembl
ID A0A067KEM2
description Protein-tyrosine-phosphatase OS=Jatropha curcas GN=JCGZ_17149 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein-tyrosine-phosphatase ptp1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21345: 556747-563456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_400 0.0 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
2 Hb_062226_140 0.0858746529 - - PREDICTED: protein NEDD1 [Jatropha curcas]
3 Hb_008695_050 0.090811294 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002805_220 0.0966293511 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_001047_240 0.1000009882 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
6 Hb_000212_290 0.1003283078 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
7 Hb_005391_040 0.101222949 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
8 Hb_020400_050 0.1065901008 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
9 Hb_076693_030 0.1066343468 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
10 Hb_089995_010 0.1075737663 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
11 Hb_007928_030 0.1079690808 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
12 Hb_000701_100 0.1083441746 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_001225_080 0.1086355686 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
14 Hb_000342_100 0.1093066353 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
15 Hb_004899_370 0.110840416 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
16 Hb_001616_040 0.1110411635 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
17 Hb_001703_060 0.111879348 - - protein kinase, putative [Ricinus communis]
18 Hb_000331_470 0.1120182884 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
19 Hb_001140_370 0.112324898 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
20 Hb_001824_010 0.1123922114 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]

Gene co-expression network

sample Hb_000207_400 Hb_000207_400 Hb_062226_140 Hb_062226_140 Hb_000207_400--Hb_062226_140 Hb_008695_050 Hb_008695_050 Hb_000207_400--Hb_008695_050 Hb_002805_220 Hb_002805_220 Hb_000207_400--Hb_002805_220 Hb_001047_240 Hb_001047_240 Hb_000207_400--Hb_001047_240 Hb_000212_290 Hb_000212_290 Hb_000207_400--Hb_000212_290 Hb_005391_040 Hb_005391_040 Hb_000207_400--Hb_005391_040 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_005307_050 Hb_005307_050 Hb_008695_050--Hb_005307_050 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_008695_040 Hb_008695_040 Hb_002805_220--Hb_008695_040 Hb_005736_060 Hb_005736_060 Hb_002805_220--Hb_005736_060 Hb_002805_220--Hb_000342_100 Hb_002805_220--Hb_008695_050 Hb_002805_220--Hb_062226_140 Hb_076693_030 Hb_076693_030 Hb_001047_240--Hb_076693_030 Hb_007875_030 Hb_007875_030 Hb_001047_240--Hb_007875_030 Hb_004784_020 Hb_004784_020 Hb_001047_240--Hb_004784_020 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_001222_080 Hb_001222_080 Hb_000212_290--Hb_001222_080 Hb_000212_290--Hb_007928_030 Hb_000212_290--Hb_005307_050 Hb_000483_300 Hb_000483_300 Hb_000212_290--Hb_000483_300 Hb_001353_010 Hb_001353_010 Hb_000212_290--Hb_001353_010 Hb_000431_070 Hb_000431_070 Hb_000212_290--Hb_000431_070 Hb_150651_040 Hb_150651_040 Hb_005391_040--Hb_150651_040 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_089995_010 Hb_089995_010 Hb_005391_040--Hb_089995_010 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_005391_040--Hb_007928_030 Hb_005391_040--Hb_000465_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4238 13.2506 9.29394 24.5356 10.3901 18.0384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7932 33.9069 14.9046 15.0473 14.3085

CAGE analysis