Hb_000841_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig841: 85233-86240
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06470g
description hypothetical protein
nr
ID XP_006374367.1
description hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
swissprot
ID Q9CA27
description Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1
trembl
ID U5FPP0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s06470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60148: 85962-86606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000841_060 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
2 Hb_000329_250 0.1225560415 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_104265_040 0.1243124728 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005137_060 0.124669156 - - -
5 Hb_008695_050 0.1431354743 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002636_080 0.1487820109 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
7 Hb_001222_080 0.1495271933 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
8 Hb_165669_010 0.1509518552 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
9 Hb_000922_040 0.1513550021 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
10 Hb_001969_080 0.1572656515 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
11 Hb_000329_340 0.1582681454 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000574_130 0.1586782419 - - calcineurin-like protein [Hevea brasiliensis]
13 Hb_000496_120 0.1598322234 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
14 Hb_000106_140 0.1610327552 - - -
15 Hb_000210_120 0.1611768029 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
16 Hb_002983_050 0.1635980099 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
17 Hb_001136_010 0.1645818452 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
18 Hb_002851_020 0.1650971779 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
19 Hb_002631_180 0.1658359304 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
20 Hb_001005_080 0.1663720742 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000841_060 Hb_000841_060 Hb_000329_250 Hb_000329_250 Hb_000841_060--Hb_000329_250 Hb_104265_040 Hb_104265_040 Hb_000841_060--Hb_104265_040 Hb_005137_060 Hb_005137_060 Hb_000841_060--Hb_005137_060 Hb_008695_050 Hb_008695_050 Hb_000841_060--Hb_008695_050 Hb_002636_080 Hb_002636_080 Hb_000841_060--Hb_002636_080 Hb_001222_080 Hb_001222_080 Hb_000841_060--Hb_001222_080 Hb_000496_120 Hb_000496_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_001136_010 Hb_001136_010 Hb_000329_250--Hb_001136_010 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020 Hb_000210_120 Hb_000210_120 Hb_104265_040--Hb_000210_120 Hb_104265_040--Hb_001222_080 Hb_000922_040 Hb_000922_040 Hb_104265_040--Hb_000922_040 Hb_003098_020 Hb_003098_020 Hb_104265_040--Hb_003098_020 Hb_005307_050 Hb_005307_050 Hb_104265_040--Hb_005307_050 Hb_000103_270 Hb_000103_270 Hb_104265_040--Hb_000103_270 Hb_004672_010 Hb_004672_010 Hb_005137_060--Hb_004672_010 Hb_003462_120 Hb_003462_120 Hb_005137_060--Hb_003462_120 Hb_001005_080 Hb_001005_080 Hb_005137_060--Hb_001005_080 Hb_001481_140 Hb_001481_140 Hb_005137_060--Hb_001481_140 Hb_005137_060--Hb_001222_080 Hb_005137_060--Hb_000922_040 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_008695_050--Hb_001653_020 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74152 15.0471 1.66099 19.2591 3.11241 11.9699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0846 30.5449 18.1691 19.707 7.51245

CAGE analysis