Hb_005285_030

Information

Type -
Description -
Location Contig5285: 30046-33234
Sequence    

Annotation

kegg
ID cit:102611490
description uncharacterized LOC102611490
nr
ID KDP43895.1
description hypothetical protein JCGZ_20905 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20905 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47149: 29943-33266
cDNA
(Sanger)
(ID:Location)		 014_B22.ab1: 30095-33264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005285_030 0.0 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
2 Hb_000665_050 0.0996832266 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
3 Hb_003442_070 0.1057753187 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
4 Hb_003462_120 0.1175469671 - - Acidic endochitinase [Theobroma cacao]
5 Hb_002849_200 0.1202068674 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
6 Hb_003266_100 0.1211011664 - - Isomerase protein [Gossypium arboreum]
7 Hb_028487_170 0.1224290874 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
8 Hb_008173_110 0.1231406098 - - DNA binding protein, putative [Ricinus communis]
9 Hb_003038_140 0.1245080445 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
10 Hb_005137_060 0.1247896828 - - -
11 Hb_000934_190 0.1249980658 - - SER/ARG-rich protein 34A [Theobroma cacao]
12 Hb_000414_130 0.1263568367 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
13 Hb_003994_260 0.1269735431 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
14 Hb_000413_280 0.1271161707 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
15 Hb_002217_230 0.1290250877 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
16 Hb_001332_040 0.1305657876 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
17 Hb_029584_050 0.1316730749 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
18 Hb_001341_100 0.1319804506 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
19 Hb_011344_190 0.1327829335 - - PREDICTED: maspardin [Jatropha curcas]
20 Hb_005306_180 0.1331676292 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_005285_030 Hb_005285_030 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003442_070 Hb_003442_070 Hb_005285_030--Hb_003442_070 Hb_003462_120 Hb_003462_120 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_028487_170 Hb_028487_170 Hb_005285_030--Hb_028487_170 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_002849_200--Hb_000414_130 Hb_002849_200--Hb_000665_050 Hb_003622_040 Hb_003622_040 Hb_002849_200--Hb_003622_040 Hb_002849_200--Hb_003266_100 Hb_000820_090 Hb_000820_090 Hb_002849_200--Hb_000820_090 Hb_000258_260 Hb_000258_260 Hb_002849_200--Hb_000258_260 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_003266_100--Hb_000665_050 Hb_000286_060 Hb_000286_060 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_004453_080 Hb_004453_080 Hb_028487_170--Hb_004453_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15748 2.13703 1.83515 2.75642 0.683791 1.23048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78315 3.53164 4.36279 4.90364 1.2061

CAGE analysis