Hb_028487_170

Information

Type -
Description -
Location Contig28487: 161992-163345
Sequence    

Annotation

kegg
ID rcu:RCOM_0629250
description hypothetical protein
nr
ID XP_012072260.1
description PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SP69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29815: 162288-163213 , PASA_asmbl_29817: 163776-164719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_170 0.0 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
2 Hb_005285_030 0.1224290874 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
3 Hb_000286_060 0.1262719072 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
4 Hb_000300_430 0.1270136186 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
5 Hb_001123_160 0.1319060288 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000700_040 0.1329906927 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
7 Hb_004453_080 0.1332599455 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
8 Hb_003622_040 0.1337287271 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
9 Hb_004800_100 0.1343892012 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000934_190 0.1356103003 - - SER/ARG-rich protein 34A [Theobroma cacao]
11 Hb_000251_030 0.1359295515 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
12 Hb_000723_170 0.1362057078 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
13 Hb_104265_040 0.1366484803 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010560_050 0.1368072048 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
15 Hb_011344_190 0.1371756849 - - PREDICTED: maspardin [Jatropha curcas]
16 Hb_001171_050 0.1395445081 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
17 Hb_005098_030 0.1412417606 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
18 Hb_006538_090 0.1419690714 - - PREDICTED: IST1 homolog [Jatropha curcas]
19 Hb_003291_020 0.1419945929 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
20 Hb_100147_010 0.1432125168 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_170 Hb_028487_170 Hb_005285_030 Hb_005285_030 Hb_028487_170--Hb_005285_030 Hb_000286_060 Hb_000286_060 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_004453_080 Hb_004453_080 Hb_028487_170--Hb_004453_080 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003442_070 Hb_003442_070 Hb_005285_030--Hb_003442_070 Hb_003462_120 Hb_003462_120 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000227_070 Hb_000227_070 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_003622_040 Hb_003622_040 Hb_000300_430--Hb_003622_040 Hb_004800_100 Hb_004800_100 Hb_000300_430--Hb_004800_100 Hb_000982_080 Hb_000982_080 Hb_000300_430--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_000300_430--Hb_011344_190 Hb_000300_430--Hb_001123_160 Hb_000173_410 Hb_000173_410 Hb_000300_430--Hb_000173_410 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000700_040--Hb_011344_190 Hb_000700_040--Hb_010560_050 Hb_000649_140 Hb_000649_140 Hb_000700_040--Hb_000649_140 Hb_002631_010 Hb_002631_010 Hb_000700_040--Hb_002631_010 Hb_003376_250 Hb_003376_250 Hb_000700_040--Hb_003376_250 Hb_003126_070 Hb_003126_070 Hb_000700_040--Hb_003126_070 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1639 2.70119 2.2054 5.37058 1.19485 0.472586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.25098 5.75113 5.1836 6.7318 2.97671

CAGE analysis