Hb_002341_020

Information

Type -
Description -
Location Contig2341: 48643-51783
Sequence    

Annotation

kegg
ID tcc:TCM_021649
description Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
nr
ID XP_011046856.1
description PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
swissprot
ID O82647
description Pyruvate decarboxylase 1 OS=Arabidopsis thaliana GN=PDC1 PE=2 SV=1
trembl
ID T1LMK9
description Uncharacterized protein OS=Triticum urartu PE=4 SV=1
Gene Ontology
ID GO:0030976
description thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002341_020 0.0 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
2 Hb_002636_080 0.1292831942 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
3 Hb_001123_210 0.1376539903 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
4 Hb_021888_050 0.1628058708 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_000975_360 0.1630039578 - - conserved hypothetical protein [Ricinus communis]
6 Hb_116608_010 0.1634159832 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
7 Hb_002042_130 0.1652355993 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_000072_210 0.1687351599 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
9 Hb_008226_080 0.1717537385 - - Protein LRP16, putative [Ricinus communis]
10 Hb_000732_250 0.1781462286 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
11 Hb_010050_050 0.1791014791 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
12 Hb_034688_020 0.1815831105 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
13 Hb_061195_020 0.1826995492 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
14 Hb_004724_210 0.1843742424 - - conserved hypothetical protein [Ricinus communis]
15 Hb_115241_010 0.1862826509 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
16 Hb_004052_050 0.1879057737 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
17 Hb_000390_140 0.1895081176 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
18 Hb_000327_380 0.1913164444 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
19 Hb_008643_200 0.1934358112 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
20 Hb_000649_130 0.1938741899 - - Polcalcin Jun o, putative [Ricinus communis]

Gene co-expression network

sample Hb_002341_020 Hb_002341_020 Hb_002636_080 Hb_002636_080 Hb_002341_020--Hb_002636_080 Hb_001123_210 Hb_001123_210 Hb_002341_020--Hb_001123_210 Hb_021888_050 Hb_021888_050 Hb_002341_020--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_002341_020--Hb_000975_360 Hb_116608_010 Hb_116608_010 Hb_002341_020--Hb_116608_010 Hb_002042_130 Hb_002042_130 Hb_002341_020--Hb_002042_130 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002774_050 Hb_002774_050 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_007192_100 Hb_007192_100 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_000975_360--Hb_115241_010 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_001189_140 Hb_001189_140 Hb_000975_360--Hb_001189_140 Hb_001894_050 Hb_001894_050 Hb_000975_360--Hb_001894_050 Hb_116608_010--Hb_004052_050 Hb_000696_290 Hb_000696_290 Hb_116608_010--Hb_000696_290 Hb_153544_010 Hb_153544_010 Hb_116608_010--Hb_153544_010 Hb_000172_640 Hb_000172_640 Hb_116608_010--Hb_000172_640 Hb_000331_470 Hb_000331_470 Hb_116608_010--Hb_000331_470 Hb_011671_100 Hb_011671_100 Hb_116608_010--Hb_011671_100 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.47104 3.01059 1.06097 2.1815 0.427999 0.527125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54932 3.33621 1.99921 1.36532 0.278352

CAGE analysis