Hb_000975_360

Information

Type -
Description -
Location Contig975: 336844-340351
Sequence    

Annotation

kegg
ID rcu:RCOM_0300970
description hypothetical protein
nr
ID XP_002534353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7Y4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0300970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_115241_010 0.0819542682 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
3 Hb_002042_130 0.1290852048 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
4 Hb_000465_230 0.1350578177 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
5 Hb_021888_050 0.1356371161 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
6 Hb_001189_140 0.136229805 - - -
7 Hb_001894_050 0.1363950228 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
8 Hb_005653_060 0.1374605212 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
9 Hb_061195_020 0.1396144447 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
10 Hb_000679_090 0.1404569945 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
11 Hb_001564_080 0.1419950131 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
12 Hb_000948_080 0.1436790288 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
13 Hb_008771_030 0.147851513 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
14 Hb_174865_030 0.1492284253 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
15 Hb_001856_200 0.1492976294 - - Esterase PIR7B, putative [Ricinus communis]
16 Hb_004994_140 0.1509539462 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
17 Hb_000914_090 0.153102391 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
18 Hb_001159_110 0.1536563263 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
19 Hb_001825_060 0.1551530761 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
20 Hb_002486_040 0.1554121248 - - -

Gene co-expression network

sample Hb_000975_360 Hb_000975_360 Hb_115241_010 Hb_115241_010 Hb_000975_360--Hb_115241_010 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_021888_050 Hb_021888_050 Hb_000975_360--Hb_021888_050 Hb_001189_140 Hb_001189_140 Hb_000975_360--Hb_001189_140 Hb_001894_050 Hb_001894_050 Hb_000975_360--Hb_001894_050 Hb_001564_080 Hb_001564_080 Hb_115241_010--Hb_001564_080 Hb_115241_010--Hb_001894_050 Hb_115241_010--Hb_001189_140 Hb_115241_010--Hb_021888_050 Hb_005653_060 Hb_005653_060 Hb_115241_010--Hb_005653_060 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_013399_050 Hb_013399_050 Hb_000465_230--Hb_013399_050 Hb_002217_020 Hb_002217_020 Hb_000465_230--Hb_002217_020 Hb_061195_020 Hb_061195_020 Hb_000465_230--Hb_061195_020 Hb_065525_090 Hb_065525_090 Hb_000465_230--Hb_065525_090 Hb_001825_060 Hb_001825_060 Hb_000465_230--Hb_001825_060 Hb_012107_060 Hb_012107_060 Hb_000465_230--Hb_012107_060 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_000363_210 Hb_000363_210 Hb_001189_140--Hb_000363_210 Hb_001892_020 Hb_001892_020 Hb_001189_140--Hb_001892_020 Hb_003376_350 Hb_003376_350 Hb_001189_140--Hb_003376_350 Hb_165026_020 Hb_165026_020 Hb_001189_140--Hb_165026_020 Hb_010883_090 Hb_010883_090 Hb_001189_140--Hb_010883_090 Hb_000230_390 Hb_000230_390 Hb_001189_140--Hb_000230_390 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_001564_080 Hb_189208_020 Hb_189208_020 Hb_001894_050--Hb_189208_020 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_001894_050--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02128 4.77291 1.82463 1.29837 1.05116 1.33865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27284 5.46387 3.74174 2.60857 0.475929

CAGE analysis